View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14983_high_1 (Length: 656)

Name: NF14983_high_1
Description: NF14983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14983_high_1
NF14983_high_1
[»] chr8 (1 HSPs)
chr8 (26-640)||(30015923-30016545)


Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 26 - 640
Target Start/End: Complemental strand, 30016545 - 30015923
Alignment:
Q  26 ctagggaaaacaaaaccacatttaagcacgtgtggtgtgggatcaccacacctcatcattttccaccactatttttagcattggctaccaccattaaaat 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30016545 ctagggaaaacaaaaccacatttaagcacgtgtggtgtgggatcaccacacctcatcattttccaccactatttttagcattggctaccaccattaaaat 30016446  T
Q  126 aaatatgatattatctatatctctacaaatataacctctannnnnnnacccagattaggtttattaatttgtcttatttcattgttactattttactctt 225  Q
    ||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30016445 aaatatgatattatctatatctctacaaatataacctctatttttttactcagattaggtttattaatttgtcttatttcattgttactattttactctt 30016346  T
Q  226 aatttgttacaaagtttccctacatcttatagtcaattattttcggttttattagttaaattataatcaattaaaattcatagataagatatatattgac 325  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30016345 aatttgttacaaagtttccctacatcttatagtaaattgttttcggttttattagttaaattataatcaattaaaattcatagataagatatatattgat 30016246  T
Q  326 tggataatcttttatactattggacaaatatcatgcaattggttttgtgggaaagtaggaattttcatcgttactttggtaattttatagtgattaattt 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30016245 tggataatcttttatactattggacaaatatcatgcaattggttttgtgggaaagtaggaattttcatcgttactttggtaattttatagtgattaattt 30016146  T
Q  426 ttctcctatataaatgttaggaag----ccatgtgtttgaatttgaaggtcccctttttcaaatttgaatacgttcttcctaaaataatgaacaaaaaat 521  Q
    |||||||||||||||||||| |||     ||||||||||| |||||| ||||||||||||||| |||||||| ||||||||       ||||||||||||    
T  30016145 ttctcctatataaatgttagcaagagatacatgtgtttgagtttgaatgtcccctttttcaaacttgaatactttcttcct-------tgaacaaaaaat 30016053  T
Q  522 ttaatcaatccgatgggaatgaaattgaggatctaatg---------------gtgtgttttctgcatctgagcctc-atttcattcccattgatctcac 605  Q
    |||||     ||||||||||||||||||||||||||||               ||||||||||| |||||||||||| ||||||||||||||||||||||    
T  30016052 ttaat-----cgatgggaatgaaattgaggatctaatgtcgttgtgttatgtcgtgtgttttctacatctgagcctcaatttcattcccattgatctcac 30015958  T
Q  606 atttataagttggagctttgacattagcttttgtg 640  Q
    |||||||||||||||||||||||||||||||||||    
T  30015957 atttataagttggagctttgacattagcttttgtg 30015923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University