View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14983_high_17 (Length: 201)
Name: NF14983_high_17
Description: NF14983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14983_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 7078391 - 7078562
Alignment:
| Q |
18 |
ggctctacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaa |
117 |
Q |
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| T |
7078391 |
ggctctacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaa |
7078490 |
T |
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| Q |
118 |
agtttggagagaatataaccaacgaaatgaatgatttttcaattgctctttgaattgctgataattcatctc |
189 |
Q |
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| T |
7078491 |
agtttggagagaatataaccaatgaaatgaatgatttttcaattgctctttgaattgctgataattcatctc |
7078562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 7028832 - 7028666
Alignment:
| Q |
23 |
tacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagttt |
122 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||| |||| ||||| ||||||||||||||||| |||| |||||||| |||||||||||||||| |
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| T |
7028832 |
tacttggtagaaaactggcattagaaccctaccataatttgctctgcactcgactattttcacaagctcgtccaaacaccaatgtgaagatgcaaagttt |
7028733 |
T |
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| Q |
123 |
ggagagaatataaccaacgaaatgaatgatttttcaattgctctttgaattgctgataattcatctc |
189 |
Q |
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| T |
7028732 |
ggagaaaatatgaccaatgaaatcaatgatttttcaattgctctttgaattgctgataattcgtctc |
7028666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 7035539 - 7035368
Alignment:
| Q |
18 |
ggctctacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaa |
117 |
Q |
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| T |
7035539 |
ggctctacttggtagaaaactggcaatagaatcctgccataatttgctctgcactcgactattttcacaagctcatccaaacaccaatgtgaagatgcaa |
7035440 |
T |
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| Q |
118 |
agtttggagagaatataaccaacgaaatgaatgatttttcaattgctctttgaattgctgataattcatctc |
189 |
Q |
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| T |
7035439 |
agtttggtgaaaatatgaccaatgaaatcaatgatttttcaattgctgtatgaagttctgatatttcgtctc |
7035368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 7021231 - 7021088
Alignment:
| Q |
21 |
tctacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagt |
120 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||| |||| || |||||||||||||||||||| |||| |||||||| |||| ||| ||||| |
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| T |
7021231 |
tctacttggtagaaaactggcaatagaatcctatcatattttgctctgcaatcaactattttcacaagctcatccaaacaccaatgtgaatatgaaaagt |
7021132 |
T |
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| Q |
121 |
ttggagagaatataaccaacgaaatgaatgatttttcaattgct |
164 |
Q |
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| T |
7021131 |
ttggagagaatatgaccaaatgaatgaatgatttttcaattgct |
7021088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 7086969 - 7087048
Alignment:
| Q |
54 |
ccatatttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatat |
133 |
Q |
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|||| ||| |||||||||||||| ||||| |||||||| |||| |||||| | |||||| ||| ||||| |||||||||| |
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| T |
7086969 |
ccatctttctctctacactcaacaattttgacaagctcatccaaacaccattttgaagaagcatagttttgagagaatat |
7087048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 7069873 - 7070013
Alignment:
| Q |
24 |
acttggtagaaaactggcattagaatcctaccatatttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttg |
123 |
Q |
| |
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|||| ||||||||| |||| || ||| | |||| ||| |||||||| ||||| | ||| || ||||| |||| ||||||| ||||||| ||| ||||| |
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| T |
7069873 |
actttgtagaaaacaggcaataaaatgtttccatctttctctctacagtcaacaactttgaccagctcatccaaacaccaagatgaagaagcatagtttt |
7069972 |
T |
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| Q |
124 |
gagagaatataaccaacgaaatgaatgatttttcaattgct |
164 |
Q |
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|||||||||| || || ||||| | ||| ||||||||||| |
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| T |
7069973 |
gagagaatatgactaatgaaattgaagatgtttcaattgct |
7070013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 4003257 - 4003367
Alignment:
| Q |
54 |
ccatatttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatgaatgatt |
153 |
Q |
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| T |
4003257 |
ccatatttctctttgcactcaattattttcacaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatatgaccaatgaaatgaatgatc |
4003356 |
T |
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| Q |
154 |
tttcaattgct |
164 |
Q |
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|||||||||| |
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| T |
4003357 |
cttcaattgct |
4003367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 3811963 - 3812040
Alignment:
| Q |
69 |
cactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatg |
146 |
Q |
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||||||| ||||||||||||||| || | |||||||| |||||| ||| ||||| |||||||| ||||| |||||| |
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| T |
3811963 |
cactcaattattttcacaagctcatctaaacaccaatgtgaagaagcatagttttctgagaatatgaccaatgaaatg |
3812040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 152
Target Start/End: Complemental strand, 3916105 - 3916008
Alignment:
| Q |
55 |
catatttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatgaatgat |
152 |
Q |
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||||||| ||| |||||||||||||||||||||| || | | |||||||| |||| | ||| ||||| |||||||| | ||| |||||||||||| |
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| T |
3916105 |
catatttctctttacactcaactattttcacaagttcttttaaacaccaatgtgaacaagcatagttttctgagaatatgatcaatgaaatgaatgat |
3916008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 146
Target Start/End: Original strand, 3821521 - 3821613
Alignment:
| Q |
54 |
ccatatttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatg |
146 |
Q |
| |
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|||||||| ||| | ||||| | ||||||||||||||| || | |||||||| |||||| ||| ||||| |||||||| ||||| |||||| |
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| T |
3821521 |
ccatatttctctttgcactcgattattttcacaagctcatctaaacaccaatgtgaagaagcatagttttttgagaatatgaccaatgaaatg |
3821613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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