View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14983_high_5 (Length: 431)
Name: NF14983_high_5
Description: NF14983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14983_high_5 |
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| [»] scaffold0187 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 42185647 - 42186060
Alignment:
| Q |
1 |
acaatgtaagtcaaaactcaaaa-taannnnnnnaaagtttcctaccttgggattgatagcacaaactatagctaccgttgagtacagcgcatagttact |
99 |
Q |
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| T |
42185647 |
acaatgtaagtcaaaactcaaaagtaatttttttaaagtttcctaccttgggattgatagcacaaactatagctaccgttgagtacagcgcatagttact |
42185746 |
T |
|
| Q |
100 |
gattaagggtaacgttgtaatctgaaccgtagtatgtaaatacatgttggatgttgtaaatcctaaatttgaaataactgagaggaactacaatcaaatt |
199 |
Q |
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| T |
42185747 |
gattaagggtaacgttgtaatctgaaccttagtatgtaaatacatattgtatgttgtaaatcctaaatttgaaataactgagaggaactacaatcaaatt |
42185846 |
T |
|
| Q |
200 |
gattgagtttttcatatctttattcttctgaaccggaattgctattctaacagtaacagacatccaannnnnnnnaacagatggacaaaacaagaatagg |
299 |
Q |
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| T |
42185847 |
gatcgagtttttcatatctttattcttctgaaccggaattgctattctaacagtaacagatatccaa-tttttttaacagatggacaaaacaagaatagg |
42185945 |
T |
|
| Q |
300 |
agttctagtaggatcaggaatgggaggtgtatccacttttaacaatgctgtcgatgctctcactcgaaagggtcataggaaaatttctccatttttcatt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42185946 |
agttctagtaggatcaggaatgggaggtgtatccacttttaacaatgctgtcgatgctctcactcgaaagggtcataggaaaatttctccatttttcatt |
42186045 |
T |
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| Q |
400 |
ccctacaccattcct |
414 |
Q |
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| T |
42186046 |
ccctacaccattcct |
42186060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 275 - 414
Target Start/End: Original strand, 42195602 - 42195741
Alignment:
| Q |
275 |
aacagatggacaaaacaagaataggagttctagtaggatcaggaatgggaggtgtatccacttttaacaatgctgtcgatgctctcactcg-aaagggtc |
373 |
Q |
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| T |
42195602 |
aacagatggacaaaacaagaataggagtactagttggatcaggaatgggtagtttaaccactattagcgatgctgtttctggttaca-tcgaaaagggac |
42195700 |
T |
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| Q |
374 |
ataggaaaatttctccatttttcattccctacaccattcct |
414 |
Q |
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| T |
42195701 |
ataggaaaatttctccattttttgttccccacaccattcct |
42195741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 42195549 - 42195591
Alignment:
| Q |
198 |
ttgattgagtttttcatatctttattcttctgaaccggaattg |
240 |
Q |
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| T |
42195549 |
ttgattgagtttttcgtatctttattcttttgaaccgaaattg |
42195591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 1849 - 1808
Alignment:
| Q |
102 |
ttaagggtaacgttgtaatctgaaccgtagtatgtaaataca |
143 |
Q |
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| T |
1849 |
ttaagggtaattttgtaatctgaaccgtagtatttaaataca |
1808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 35052212 - 35052267
Alignment:
| Q |
197 |
attgattgagtttttcatatctttattcttctgaaccggaattgctattctaacagt |
253 |
Q |
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| T |
35052212 |
attgtttgcgtttttcgtatctttattcttttgaaccgg-attgctgttctaacagt |
35052267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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