View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14983_low_1 (Length: 656)

Name: NF14983_low_1
Description: NF14983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14983_low_1
NF14983_low_1
[»] chr8 (1 HSPs)
chr8 (26-640)||(30015923-30016545)


Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 26 - 640
Target Start/End: Complemental strand, 30016545 - 30015923
Alignment:
Q  26 ctagggaaaacaaaaccacatttaagcacgtgtggtgtgggatcaccacacctcatcattttccaccactatttttagcattggctaccaccattaaaat 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30016545 ctagggaaaacaaaaccacatttaagcacgtgtggtgtgggatcaccacacctcatcattttccaccactatttttagcattggctaccaccattaaaat 30016446  T
Q  126 aaatatgatattatctatatctctacaaatataacctctannnnnnnacccagattaggtttattaatttgtcttatttcattgttactattttactctt 225  Q
    ||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30016445 aaatatgatattatctatatctctacaaatataacctctatttttttactcagattaggtttattaatttgtcttatttcattgttactattttactctt 30016346  T
Q  226 aatttgttacaaagtttccctacatcttatagtcaattattttcggttttattagttaaattataatcaattaaaattcatagataagatatatattgac 325  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30016345 aatttgttacaaagtttccctacatcttatagtaaattgttttcggttttattagttaaattataatcaattaaaattcatagataagatatatattgat 30016246  T
Q  326 tggataatcttttatactattggacaaatatcatgcaattggttttgtgggaaagtaggaattttcatcgttactttggtaattttatagtgattaattt 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30016245 tggataatcttttatactattggacaaatatcatgcaattggttttgtgggaaagtaggaattttcatcgttactttggtaattttatagtgattaattt 30016146  T
Q  426 ttctcctatataaatgttaggaag----ccatgtgtttgaatttgaaggtcccctttttcaaatttgaatacgttcttcctaaaataatgaacaaaaaat 521  Q
    |||||||||||||||||||| |||     ||||||||||| |||||| ||||||||||||||| |||||||| ||||||||       ||||||||||||    
T  30016145 ttctcctatataaatgttagcaagagatacatgtgtttgagtttgaatgtcccctttttcaaacttgaatactttcttcct-------tgaacaaaaaat 30016053  T
Q  522 ttaatcaatccgatgggaatgaaattgaggatctaatg---------------gtgtgttttctgcatctgagcctc-atttcattcccattgatctcac 605  Q
    |||||     ||||||||||||||||||||||||||||               ||||||||||| |||||||||||| ||||||||||||||||||||||    
T  30016052 ttaat-----cgatgggaatgaaattgaggatctaatgtcgttgtgttatgtcgtgtgttttctacatctgagcctcaatttcattcccattgatctcac 30015958  T
Q  606 atttataagttggagctttgacattagcttttgtg 640  Q
    |||||||||||||||||||||||||||||||||||    
T  30015957 atttataagttggagctttgacattagcttttgtg 30015923  T

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