View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14983_low_13 (Length: 260)

Name: NF14983_low_13
Description: NF14983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14983_low_13
NF14983_low_13
[»] chr2 (2 HSPs)
chr2 (125-260)||(17133816-17133962)
chr2 (4-76)||(17133694-17133766)
[»] chr4 (1 HSPs)
chr4 (125-192)||(39118463-39118530)
[»] chr3 (2 HSPs)
chr3 (215-256)||(39331041-39331082)
chr3 (127-175)||(43471468-43471516)
[»] chr1 (1 HSPs)
chr1 (127-176)||(52744629-52744678)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 125 - 260
Target Start/End: Original strand, 17133816 - 17133962
Alignment:
Q  125 gttctaaacgataaaattttggattttaagaggtggagtcatgcaagaagtcatttttagaggagtcttgg-----------tttatgattttttgggca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||           ||||||||||||||| ||    
T  17133816 gttctaaacgataaaattttggattttaagaggtggagtcatgcaagaagtcacttttagaggagtcttggtctatgatttttttatgattttttggaca 17133915  T
Q  214 tgtttcggagcaatcaaatcaaatagcctaaaaaatggattttcgaa 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17133916 tgtttcggagcaatcaaatcaaatagcctaaaaaatggattttcgaa 17133962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 17133694 - 17133766
Alignment:
Q  4 atgtcgaagaaaatgaaatatagatataacaagactaccaaaacattctaaaatttaaataaagccaatgcaa 76  Q
    ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17133694 atgtcaaataaaatgaaatatagatataaaaagactaccaaaacattctaaaatttaaataaagccaatgcaa 17133766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 39118530 - 39118463
Alignment:
Q  125 gttctaaacgataaaattttggattttaagaggtggagtcatgcaagaagtcatttttagaggagtct 192  Q
    |||||||||||| ||||||||||||||||| ||||| |||||| |||||||| ||||||  |||||||    
T  39118530 gttctaaacgatgaaattttggattttaaggggtggtgtcatgtaagaagtcttttttatgggagtct 39118463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 39331082 - 39331041
Alignment:
Q  215 gtttcggagcaatcaaatcaaatagcctaaaaaatggatttt 256  Q
    |||||| |||||||||||||||||||||||||| ||||||||    
T  39331082 gtttcgaagcaatcaaatcaaatagcctaaaaactggatttt 39331041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 43471468 - 43471516
Alignment:
Q  127 tctaaacgataaaattttggattttaagaggtggagtcatgcaagaagt 175  Q
    |||||||||| |||||||||||||| || ||||||||| || |||||||    
T  43471468 tctaaacgatgaaattttggattttgaggggtggagtcttgtaagaagt 43471516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 52744629 - 52744678
Alignment:
Q  127 tctaaacgataaaattttggattttaagaggtggagtcatgcaagaagtc 176  Q
    |||||||||| |||||||| ||||| |||||||||||| || ||||||||    
T  52744629 tctaaacgatgaaattttgaattttgagaggtggagtcttgtaagaagtc 52744678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University