View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14983_low_15 (Length: 226)

Name: NF14983_low_15
Description: NF14983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14983_low_15
NF14983_low_15
[»] chr2 (1 HSPs)
chr2 (21-136)||(23861854-23861969)
[»] chr1 (2 HSPs)
chr1 (88-133)||(35911732-35911777)
chr1 (88-133)||(34934591-34934636)
[»] chr8 (2 HSPs)
chr8 (21-133)||(45517805-45517917)
chr8 (21-81)||(1420337-1420397)
[»] chr7 (2 HSPs)
chr7 (21-133)||(9454814-9454926)
chr7 (88-133)||(32197752-32197797)
[»] chr3 (1 HSPs)
chr3 (38-133)||(43641263-43641358)
[»] scaffold0002 (1 HSPs)
scaffold0002 (21-75)||(376271-376325)
[»] chr6 (1 HSPs)
chr6 (21-94)||(26419615-26419688)


Alignment Details
Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 23861854 - 23861969
Alignment:
Q  21 aaaatagtccatggatccactttattgttgatttggaccatttttacttatgtggtagatgttgattgtgcaaacatgttcatgtggcatccaggtggga 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23861854 aaaatagtccatggatccactttattgttgatttggaccatttttacttatgtggcagatgttgattgtgcaaacatgttcatgtggcatccaggtggga 23861953  T
Q  121 attatcttattttgac 136  Q
    ||||||||||||||||    
T  23861954 attatcttattttgac 23861969  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 35911777 - 35911732
Alignment:
Q  88 gtgcaaacatgttcatgtggcatccaggtgggaattatcttatttt 133  Q
    |||||||||||| |||||||||||||||||| |||||| |||||||    
T  35911777 gtgcaaacatgtacatgtggcatccaggtggcaattattttatttt 35911732  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 34934636 - 34934591
Alignment:
Q  88 gtgcaaacatgttcatgtggcatccaggtgggaattatcttatttt 133  Q
    ||||||| |||| |||||||||||||||||| |||||| |||||||    
T  34934636 gtgcaaatatgtacatgtggcatccaggtggcaattattttatttt 34934591  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 45517917 - 45517805
Alignment:
Q  21 aaaatagtccatggatccactttattgttgatttggaccatttttacttatgtggtagatgttgattgtgcaaacatgttcatgtggcatccaggtggga 120  Q
    ||||||||| ||||  ||| ||| ||| | ||||||  ||||||  |||||||||||| || ||| |||| |||| |||  ||||||||||||||||| |    
T  45517917 aaaatagtctatgggcccaatttcttgctaatttggcgcattttcgcttatgtggtaggtgctgactgtgtaaacttgtatatgtggcatccaggtggaa 45517818  T
Q  121 attatcttatttt 133  Q
    ||||| |||||||    
T  45517817 attattttatttt 45517805  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 1420397 - 1420337
Alignment:
Q  21 aaaatagtccatggatccactttattgttgatttggaccatttttacttatgtggtagatg 81  Q
    ||||||||||||||| ||||||||||| ||||||||    |||||||||| |||| |||||    
T  1420397 aaaatagtccatggacccactttattgatgatttggctagtttttacttaggtggcagatg 1420337  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 9454926 - 9454814
Alignment:
Q  21 aaaatagtccatggatccactttattgttgatttggaccatttttacttatgtggtagatgttgattgtgcaaacatgttcatgtggcatccaggtggga 120  Q
    |||||||||| || | ||||||| ||| ||||||||  ||||||| || ||||| ||| || ||| |||| |||| |||  |||||||||||| |||| |    
T  9454926 aaaatagtccctgaacccactttcttgctgatttggcacattttttctcatgtgataggtgctgactgtgtaaacttgtatatgtggcatccaagtggca 9454827  T
Q  121 attatcttatttt 133  Q
    ||||| |||||||    
T  9454826 attattttatttt 9454814  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 32197797 - 32197752
Alignment:
Q  88 gtgcaaacatgttcatgtggcatccaggtgggaattatcttatttt 133  Q
    |||||||||||| |||||||||||||||||  |||||| |||||||    
T  32197797 gtgcaaacatgtacatgtggcatccaggtgacaattattttatttt 32197752  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 43641263 - 43641358
Alignment:
Q  38 cactttattgttgatttggaccatttttacttatgtggtagatgttgattgtgcaaacatgttcatgtggcatccaggtgggaattatcttatttt 133  Q
    |||||| ||||||||||||  ||||||  || ||||||||| || ||| |||| |||| |||  |||||||||||| |||| |||||| |||||||    
T  43641263 cactttcttgttgatttggcacattttctctcatgtggtaggtgctgactgtgtaaacttgtatatgtggcatccaagtggcaattattttatttt 43641358  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 376325 - 376271
Alignment:
Q  21 aaaatagtccatggatccactttattgttgatttggaccatttttacttatgtgg 75  Q
    |||||||||| |||||||||||| || |||||||||  ||||||| |||||||||    
T  376325 aaaatagtccctggatccactttctttttgatttggttcatttttgcttatgtgg 376271  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 26419615 - 26419688
Alignment:
Q  21 aaaatagtccatggatccactttattgttgatttggaccatttttacttatgtggtagatgttgattgtgcaaa 94  Q
    |||||||||| |||   |||||| ||||||||||||| |||||| |||||||||| ||||| ||| | ||||||    
T  26419615 aaaatagtccctgggcgcactttcttgttgatttggatcattttaacttatgtggcagatgctgagtatgcaaa 26419688  T

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