View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14983_low_16 (Length: 221)
Name: NF14983_low_16
Description: NF14983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14983_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 27348501 - 27348687
Alignment:
| Q |
18 |
atgaagacgatgctgagaaggagaaacggttcaaaatttttgcggagaaattggaatacatagagaggttcaaccgtgatgggaatgagacttatgagtt |
117 |
Q |
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| T |
27348501 |
atgaagacgatgctgagaaggagaaacggttcaaaatttttgcggagaaattagaatacatagagaggttcaaccgtgatgggaatgagacttatgagtt |
27348600 |
T |
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| Q |
118 |
gggtttgaatcaattttcagatttaactcatgaagagttcgtttctgcatatggttgttcccgtcttgaaaaccatttactagagtc |
204 |
Q |
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| T |
27348601 |
gggtttgaatcaattttcagatttaacatatgaagagtttgtttctgcatatggttgttcccgtcttgaaaaccatttactagagtc |
27348687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 28418442 - 28418308
Alignment:
| Q |
26 |
gatgctgagaaggagaaacggttcaaaatttttgcggagaaattggaatacatagagaggttcaaccgtgatgggaatgagacttatgagttgggtttga |
125 |
Q |
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|||||||||||| | ||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||| |
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| T |
28418442 |
gatgctgagaagaataaacggttcaagatttttgcagagaaattggaatacatagagaatttcaaccgtgatggaaatgcgacttatgagttgggtctga |
28418343 |
T |
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| Q |
126 |
atcaattttcagatttaactcatgaagagttcgtt |
160 |
Q |
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| T |
28418342 |
atcaatactcagatttaactgatgaagagtacgtt |
28418308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 28406558 - 28406661
Alignment:
| Q |
26 |
gatgctgagaaggagaaacggttcaaaatttttgcggagaaattggaatacatagagaggttcaaccgtgatgggaatgagacttatgagttgggtttga |
125 |
Q |
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| T |
28406558 |
gatgctgagaaggagaaacagttcaagatttttgcagaaaaattggaatatgtagagaggttcaaccgtgatggaaatgagacttataagttgggtctga |
28406657 |
T |
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| Q |
126 |
atca |
129 |
Q |
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|||| |
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| T |
28406658 |
atca |
28406661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 28284941 - 28284811
Alignment:
| Q |
26 |
gatgctgagaaggagaaacggttcaaaatttttgcggagaaattggaatacatagagaggttcaaccgtgatgggaatgagacttatgagttgggtttga |
125 |
Q |
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|||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||||| || ||||||| ||| || |||||||| |||||||| ||| |
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| T |
28284941 |
gatgctgagaaggagaaacgattcaagatttttgcagagaatttagaatacatagagaattttaaccgtgctggaaaacagacttataagttgggtctga |
28284842 |
T |
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| Q |
126 |
atcaattttcagatttaactcatgaagagtt |
156 |
Q |
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| T |
28284841 |
atcaattctctgatttaacaaatgaagagtt |
28284811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 28003704 - 28003823
Alignment:
| Q |
26 |
gatgctgagaaggagaaacggttcaaaatttttgcggagaaattggaatacatagagaggttcaaccgtgatgggaatgagacttatgagttgggtttga |
125 |
Q |
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|||| |||||||||||||||||| || |||||||| |||| ||||| ||||| |||| |||||||||| ||| ||||| ||||||||||||||| ||| |
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| T |
28003704 |
gatgttgagaaggagaaacggtttaagatttttgcaaagaatttggagtacatcgagaatttcaaccgtgctggaaatgaaacttatgagttgggtctga |
28003803 |
T |
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| Q |
126 |
atcaattttcagatttaact |
145 |
Q |
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||||||||| ||||||||| |
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| T |
28003804 |
atcaatttttggatttaact |
28003823 |
T |
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