View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14983_low_18 (Length: 216)

Name: NF14983_low_18
Description: NF14983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14983_low_18
NF14983_low_18
[»] chr5 (2 HSPs)
chr5 (17-199)||(43156294-43156474)
chr5 (25-162)||(31266743-31266882)
[»] chr3 (1 HSPs)
chr3 (27-168)||(14964249-14964387)
[»] chr1 (9 HSPs)
chr1 (69-167)||(49540557-49540655)
chr1 (27-161)||(48179314-48179445)
chr1 (29-168)||(45196714-45196850)
chr1 (27-161)||(47873824-47873955)
chr1 (102-155)||(40027111-40027164)
chr1 (34-153)||(33860531-33860647)
chr1 (34-153)||(33920276-33920392)
chr1 (64-182)||(49440417-49440535)
chr1 (67-152)||(48529051-48529136)
[»] chr7 (2 HSPs)
chr7 (114-169)||(32347535-32347590)
chr7 (108-157)||(25837115-25837164)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 43156294 - 43156474
Alignment:
Q  17 gaggaggtgttggaagtgtaatgcatttttgcaatttttctttctcatcccatgaatacacacaacattttgtagaaaaaagaccgatgacatacataga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||  ||||||||||||||    
T  43156294 gaggaggtgttggaagtgtaatgcatttttgcaatttttctttctcttcccatgaatacac--aacattttgtagaaaaaagactcatgacatacataga 43156391  T
Q  117 gttactctcatatccccacctgcttgggttgctcaatgcacaacaacttctcgacatcatatttgaagtataaagtaatgcaa 199  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| | |||||||||||||||||    
T  43156392 gttactctcatatccccacctgcttgggttgctcattgcacaacaacttcccggcatcatattcgtagtataaagtaatgcaa 43156474  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 31266882 - 31266743
Alignment:
Q  25 gttggaagtgtaatgcatttttgcaatttttctttctcatcccatgaatacacacaacattttgtagaaaaaaga--ccgatgacatacatagagttact 122  Q
    ||||||||||||||||||||||||||||||  ||| ||||||| |||||| |||   |||||||| ||||||| |  | | |||||||||||||||| ||    
T  31266882 gttggaagtgtaatgcatttttgcaattttattttatcatcccctgaatagacattgcattttgttgaaaaaaaaaactgctgacatacatagagttgct 31266783  T
Q  123 ctcatatccccacctgcttgggttgctcaatgcacaacaa 162  Q
    |||||||||||||||| | ||||||||||||||| |||||    
T  31266782 ctcatatccccacctgttggggttgctcaatgcataacaa 31266743  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 168
Target Start/End: Complemental strand, 14964387 - 14964249
Alignment:
Q  27 tggaagtgtaatgcatttttgcaatttttctttctcatcccatgaatacacacaacattttgtagaaaaaagaccgatgacatacatagagttactctca 126  Q
    |||||| ||||||||||||||||||| ||   | |||||||  |||||||||| |||| ||||||| ||||||| ||||||||||| |||||| || |||    
T  14964387 tggaagcgtaatgcatttttgcaattgtt---tatcatccccagaatacacactacatattgtagataaaagactgatgacatacacagagttgctttca 14964291  T
Q  127 tatccccacctgcttgggttgctcaatgcacaacaacttctc 168  Q
    ||||||||| || ||||||||||||||||| ||||| |||||    
T  14964290 tatccccacttgtttgggttgctcaatgcataacaatttctc 14964249  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 167
Target Start/End: Original strand, 49540557 - 49540655
Alignment:
Q  69 tgaatacacacaacattttgtagaaaaaagaccgatgacatacatagagttactctcatatccccacctgcttgggttgctcaatgcacaacaacttct 167  Q
    ||||||||||| |||| |||||||   ||||| |||||||||||||||||| ||||| |||||||| || || ||||||||||||||| ||||||||||    
T  49540557 tgaatacacactacatattgtagatccaagacggatgacatacatagagttgctctcgtatccccatctactcgggttgctcaatgcataacaacttct 49540655  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 48179445 - 48179314
Alignment:
Q  27 tggaagtgtaatgcatttttgcaatttttctttctcatcccatgaatacacacaacattttgtagaaaaaagaccgatgacatacatagagttactctca 126  Q
    |||||| ||||||||||||||||||||||   | ||||| | |||||||||||  |||  || ||| |||| |||||||||||||| |||||| ||||||    
T  48179445 tggaagcgtaatgcatttttgcaattttt---tatcatctcctgaatacacactgcatactgcagataaaataccgatgacatacacagagtttctctca 48179349  T
Q  127 tatccccacctgcttgggttgctcaatgcacaaca 161  Q
    |||||||||  | |||||||| |||||||| ||||    
T  48179348 tatccccacaagtttgggttgttcaatgcataaca 48179314  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 168
Target Start/End: Complemental strand, 45196850 - 45196714
Alignment:
Q  29 gaagtgtaatgcatttttgcaatttttctttctcatcccatgaatacacacaacattttgtagaaaaaagaccgatgacatacatagagttactctcata 128  Q
    |||||||||||| ||||||||||||||   | |||| || ||||||| ||| |||| ||||||| ||||||  |||| |||||||||| || | ||||||    
T  45196850 gaagtgtaatgcttttttgcaattttt---tatcattccctgaatacgcactacatattgtagataaaagattgatgtcatacatagaattgcactcata 45196754  T
Q  129 tccccacctgcttgggttgctcaatgcacaacaacttctc 168  Q
    |||||| ||  | || |||||||||||| ||||| |||||    
T  45196753 tccccatctattcggattgctcaatgcataacaatttctc 45196714  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 47873955 - 47873824
Alignment:
Q  27 tggaagtgtaatgcatttttgcaatttttctttctcatcccatgaatacacacaacattttgtagaaaaaagaccgatgacatacatagagttactctca 126  Q
    |||||| ||||||||||||| ||||||||   | ||||||| ||||||||| | ||||  ||||||  ||  || |||| |||||| |||||| ||||||    
T  47873955 tggaagcgtaatgcatttttacaattttt---tatcatcccctgaatacactctacatagtgtagatgaagaactgatggcatacacagagttgctctca 47873859  T
Q  127 tatccccacctgcttgggttgctcaatgcacaaca 161  Q
    ||||| |||||| | ||||||||||||||| ||||    
T  47873858 tatcctcacctgttcgggttgctcaatgcataaca 47873824  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 40027164 - 40027111
Alignment:
Q  102 gatgacatacatagagttactctcatatccccacctgcttgggttgctcaatgc 155  Q
    ||||||||||| ||||||||||||||||||||||||  | ||||||||||||||    
T  40027164 gatgacatacacagagttactctcatatccccacctattagggttgctcaatgc 40027111  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 153
Target Start/End: Complemental strand, 33860647 - 33860531
Alignment:
Q  34 gtaatgcatttttgcaatttttctttctcatcccatgaatacacacaacattttgtagaaaaaagaccgatgacatacatagagttactctcatatcccc 133  Q
    ||||| ||||||||||| ||||   | ||||| ||||||||||||| |||| ||||| ||||  ||  ||||| ||||| |||||| |||||||||||||    
T  33860647 gtaatacatttttgcaactttt---tatcatctcatgaatacacactacatcttgtaaaaaattgattgatgatatacacagagttgctctcatatcccc 33860551  T
Q  134 acctgcttgggttgctcaat 153  Q
    ||  ||| || |||||||||    
T  33860550 acaggctcggattgctcaat 33860531  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 33920276 - 33920392
Alignment:
Q  34 gtaatgcatttttgcaatttttctttctcatcccatgaatacacacaacattttgtagaaaaaagaccgatgacatacatagagttactctcatatcccc 133  Q
    ||||| ||||||||||| ||||   | ||||| ||||||||||||| |||| ||||| ||||  ||  ||||| ||||| |||||| |||||||||||||    
T  33920276 gtaatacatttttgcaactttt---tatcatctcatgaatacacactacatcttgtaaaaaattgattgatgatatacacagagttgctctcatatcccc 33920372  T
Q  134 acctgcttgggttgctcaat 153  Q
    ||  ||| || |||||||||    
T  33920373 acaggctcggattgctcaat 33920392  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 49440417 - 49440535
Alignment:
Q  64 tcccatgaatacacacaacattttgtagaaaaaagaccgatgacatacatagagttactctcatatccccacctgcttgggttgctcaatgcacaacaac 163  Q
    |||||||||||||    |||| ||||||| |||| || ||||||||| | ||| |||||||||||||||||| || | || || ||||||||| |||| |    
T  49440417 tcccatgaatacatgatacatgttgtagataaaacactgatgacataaacagaattactctcatatccccacatgttcggatttctcaatgcataacagc 49440516  T
Q  164 ttctcgacatcatatttga 182  Q
    || ||  || |||||||||    
T  49440517 ttttctccaacatatttga 49440535  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 48529136 - 48529051
Alignment:
Q  67 catgaatacacacaacattttgtagaaaaaagaccgatgacatacatagagttactctcatatccccacctgcttgggttgctcaa 152  Q
    |||||||||||||  ||| ||||||| | ||||| ||||||||||| | | || |||||||||| | ||||  |||||||||||||    
T  48529136 catgaatacacactgcatgttgtagatagaagactgatgacatacacacaattgctctcatatctcaacctatttgggttgctcaa 48529051  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 32347535 - 32347590
Alignment:
Q  114 agagttactctcatatccccacctgcttgggttgctcaatgcacaacaacttctcg 169  Q
    |||||| |||||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  32347535 agagttgctctcatatccccacctgtttgggttgctcaatgcataacaatttctcg 32347590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 25837115 - 25837164
Alignment:
Q  108 atacatagagttactctcatatccccacctgcttgggttgctcaatgcac 157  Q
    ||||||||| || |||||||||||||||||||||||||| ||||| ||||    
T  25837115 atacatagaattgctctcatatccccacctgcttgggtttctcaaagcac 25837164  T

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