View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14983_low_3 (Length: 609)
Name: NF14983_low_3
Description: NF14983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14983_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 2250125 - 2249625
Alignment:
| Q |
1 |
cacagaactggtggtgatacctatgagtactcacccaatcaattggatttccctgcacatcaaaaccaaaacaacatttcatat--tcccttcaataaga |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
2250125 |
cacagaactggtggtgatacctatgagtactcacccaatcaattggatttccctgcacatcaaaatcaaaacaacatttcatatattcccttcaataaga |
2250026 |
T |
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| Q |
99 |
aaactatgaagaatataaaaagatgttagaattagtaggagattattaaagatagttaaaacttagttaggattgaatttggattccctgccaccagggg |
198 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
2250025 |
aaactatgaagaataaaaaaagatgttagaattagtaggagattattaaagatagttaaaactaagttaggattgaatttggattccctgccacccgggg |
2249926 |
T |
|
| Q |
199 |
atctcacattcaagacatcagtga--------tagttcgatctagattaaacggtccaaacaaatgcaagactttaattttacaatttaaaatataaagt |
290 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2249925 |
atctcacattcaagacatcagtgatagtgtgatagttcgatctagattaaacggtccaaacaaaagcaagactttaattttacaatttaaaatataaagt |
2249826 |
T |
|
| Q |
291 |
ttgaatttgaatcgtatgatcttgatcaaacgaccaccaatgtcctgtctccatgaatgctagaaaatcccaaccgtggagattctaaatgcggttggga |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2249825 |
ttgaatttgaatcgtatgatcttgatcaaacgaccaccaatgtcctgtctccatgaatgctagaaaatcccaaccgtggagattctaaatgcggttggga |
2249726 |
T |
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| Q |
391 |
cactatataaagtctatctcacactcattg------------acttcaactacatttaataatctccaacgaattccaacaacagacacaaaattgaatg |
478 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2249725 |
cactatataaagtctatctcacactcattgtaatcctaaccaacttcaactacatttaataatctccaacgaattccaacaacagacacaaaattgaatg |
2249626 |
T |
|
| Q |
479 |
c |
479 |
Q |
| |
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| T |
2249625 |
c |
2249625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 497 - 595
Target Start/End: Complemental strand, 2249596 - 2249498
Alignment:
| Q |
497 |
ctctacctgaagagcaagaactccacaataagcaaagaaatattcaagccatttaggaagcttaaaacttctatgagaaagatttctatggaaagaagt |
595 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2249596 |
ctctacctgaagagcaagaactccacaataagcaaagaaatattcaagccatttaggaagcttaaaacttctatgagaaagatttctatggaaagaagt |
2249498 |
T |
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