View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14983_low_4 (Length: 465)
Name: NF14983_low_4
Description: NF14983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14983_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 21 - 448
Target Start/End: Original strand, 11664282 - 11664712
Alignment:
| Q |
21 |
tgagcaatgaagtgagtggtgtgttgggccaaacatataaacctaactatgtgagtcgtgtgaacattggtgcaaaaatgccaataatgggaggtggaaa |
120 |
Q |
| |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11664282 |
tgagcaatgaagtaaatggtgtgttgggccaaacatataaacctaactatgtgagtcgtgtgaacattggtgcaaaaatgccaataatgggaggtggaaa |
11664381 |
T |
|
| Q |
121 |
agagtatgaaacctcaagcttgttctctccagattgttctgtggcacgtttcactgggaacaatggattaaacaaaaatattggaattgtggagaatttg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11664382 |
agagtatgaaacctcaagcttgttctctccagattgttctgtggcacgtttcattgggaacaatggattaaacaaaaatattggaattgtggagaatttg |
11664481 |
T |
|
| Q |
221 |
gccctccctagcttgagctgcacaagtggaattgatggagaaggagttgtctgcaaaagataattttattgtcctaaagagcacgcaaatgatacttcaa |
320 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11664482 |
gccctccctagcttgagctgcacaagtggaattgatggagaaggagttgtctgcaaaagataattttattgtcctaaagagcacgcaaatgatacttcaa |
11664581 |
T |
|
| Q |
321 |
tatgaaaatatttataattttattgataagaataaag---tatcaaatcatcaaataaattgaatgattttggtttaaccttaaaaaattgtgtaccatg |
417 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
11664582 |
tatgaaaaaatttataattttattgataagaataaagtaatatcaaatcatcaaataaatggaatgattttggtttaaccttaaaaaattgtgtatcatg |
11664681 |
T |
|
| Q |
418 |
tctctttannnnnnncttgttatgtattcat |
448 |
Q |
| |
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|||||||| |||||||||||||||| |
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| T |
11664682 |
tctctttatttttttcttgttatgtattcat |
11664712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 21 - 424
Target Start/End: Complemental strand, 7344214 - 7343811
Alignment:
| Q |
21 |
tgagcaatgaagtgagtggtgtgttgggccaaacatataaacctaactatgtgagtcgtgtgaacattggtgcaaaaatgccaataatgggaggtggaaa |
120 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| ||| |
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| T |
7344214 |
tgagcaatgaagtgagtggcgtgttgggccaaacatataaacctaactatgtgagtcgtgtgaacattggagcaagaatgccaataatgggcggtgcaaa |
7344115 |
T |
|
| Q |
121 |
agagtatgaaacctcaagcttgttctctccagattgttctgtggcacgtttcactgggaacaatggattaaacaaaaatattggaattgtggagaatttg |
220 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||| |||| ||||||||||||| ||||||||| | ||||||||||| |
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| T |
7344114 |
agagtatgaaacgtcaagcttgttctctccagattgttctgtagcacgtttcattggaaacactggattaaacaaagatattggaactatggagaatttg |
7344015 |
T |
|
| Q |
221 |
gccctccctagcttgagctgcacaagtggaattgatggagaaggagttgtctgcaaaagataattttattgtcctaaagagcacgcaaatgatactt-ca |
319 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | || ||||||||| | |
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| T |
7344014 |
gccctccctagcttgaaatgcacaagtggaattgatggagaaggagttgtctgcaaaagataatttcattgtccaaaagaggatgctgatgatacttccc |
7343915 |
T |
|
| Q |
320 |
atatgaaaatatttataattttattgataagaataaagtatcaaatcatcaaataaattgaatgattttggtttaaccttaaaaaattgtgta-ccatgt |
418 |
Q |
| |
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||| ||||| | ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
7343914 |
ata-gaaaa-aattataattttattaataagaataaagtatcaaatcatcaaataacttgaatgattttggtttaaccttaaaaaaatgtgtattcatgt |
7343817 |
T |
|
| Q |
419 |
ctcttt |
424 |
Q |
| |
|
|||||| |
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|
| T |
7343816 |
ctcttt |
7343811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 21 - 287
Target Start/End: Original strand, 11655825 - 11656091
Alignment:
| Q |
21 |
tgagcaatgaagtgagtggtgtgttgggccaaacatataaacctaactatgtgagtcgtgtgaacattggtgcaaaaatgccaataatgggaggtggaaa |
120 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
11655825 |
tgagcaatgaagtaagtggtgtgttgggccaaacatataaacctaactatgtgagtcgtgtgaacattggagcaaaaatgccaataatgggaggtggaaa |
11655924 |
T |
|
| Q |
121 |
agagtatgaaacctcaagcttgttctctccagattgttctgtggcacgtttcactgggaacaatggattaaacaaaaatattggaattgtggagaatttg |
220 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||| || || ||||| ||| || | ||||| ||||| |||||| || |||||||||||| |
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| T |
11655925 |
agagtatgaaacaacaagcttgttctccccagattgttcggtagctcgttttgttggtaatgacggattcaacaatgatattgcgatggtggagaatttg |
11656024 |
T |
|
| Q |
221 |
gccctccctagcttgagctgcacaagtggaattgatggagaaggagttgtctgcaaaagataatttt |
287 |
Q |
| |
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||||||||| |||| || ||||||||||||||||| |||||||||| |||| |||||||||| |
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| T |
11656025 |
agtctccctagcatgagttgtacaagtggaattgatgggcaaggagttgtatgcaggagataatttt |
11656091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 11669593 - 11669858
Alignment:
| Q |
21 |
tgagcaatgaagtgagtggtgtgttgggccaaacatataaacctaactatgtgagtcgtgtgaacattggtgcaaaaatgccaataatgggaggtggaaa |
120 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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|
| T |
11669593 |
tgagcaatgaagtaagtggtgtgttgggccaaacatataaatctaactatgtgagtcgtgtgaacattggagcgaaaatgccaataatgggaggtggaaa |
11669692 |
T |
|
| Q |
121 |
agagtatgaaacctcaagcttgttctctccagattgttctgtggcacgtttcactgggaacaatggattaaacaaaaatattggaattgtggagaatttg |
220 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||| || || ||||| ||| || | ||||| ||||| |||||| || ||||| || | |
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|
| T |
11669693 |
agagtatgaaacaacaagcttgttctccccagattgttccgtagctcgttttgttggtaatgacggattcaacaatgatattgcgatggtggaagatctt |
11669792 |
T |
|
| Q |
221 |
gccctccctagcttgagctgcacaagtggaattgatggagaaggagttgtctgcaaaagataattt |
286 |
Q |
| |
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||||||||| |||| ||||||||||| ||||||||||||||||||| |||| ||||||||| |
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|
| T |
11669793 |
atgctccctagcatgagttgcacaagtggtgttgatggagaaggagttgtttgcaggagataattt |
11669858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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