View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14983_low_8 (Length: 375)
Name: NF14983_low_8
Description: NF14983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14983_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 41551883 - 41551531
Alignment:
| Q |
1 |
aaacctcacatcaacctgtttttcataaacaaatcaaagtacactcatcaaactaaaatctatgcacctaactaaccaactaactaaccacatctcaaat |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41551883 |
aaacctcacatcaacctgtttctcataaacaaatcaaagtacactcatcaaactaaaatctatgcacctaactaaccaactaactaaccacatctcaaat |
41551784 |
T |
|
| Q |
101 |
ccagtcttgtcaattgtgattgcaaaaacagttgtttgttcaaattccgtcatgatacagcactattttatttannnnnnngctgctggctccgtggcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
41551783 |
ccagtcttgtcaattgtgattgcaaaaacagttgtttgatcaaattccgtc----tacagcactattttatttatttttttgctgctggctcagtggcca |
41551688 |
T |
|
| Q |
201 |
acacatacttaaataaacacagacggggacggggaagtgtagagacccggatcccggattccacataaaatgtcccacagccaaaccactagactgtaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41551687 |
acacatacttaaataaacacagacggggacggggaagtgtagagacccagatcccggattccacataaaatgtaccacagccaaaccactagactgtaac |
41551588 |
T |
|
| Q |
301 |
aatggggacgatacaccactatttgacaacactttgtactaaattccgctaccctac |
357 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41551587 |
aatggggatgatacaccactatttgacaacactttgtactaaattccgctaccctac |
41551531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 344
Target Start/End: Complemental strand, 1118971 - 1118943
Alignment:
| Q |
316 |
ccactatttgacaacactttgtactaaat |
344 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1118971 |
ccactatttgacaacactttgtactaaat |
1118943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 344
Target Start/End: Complemental strand, 26373147 - 26373118
Alignment:
| Q |
315 |
accactatttgacaacactttgtactaaat |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
26373147 |
accactatttgacaacactttgtactaaat |
26373118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 344
Target Start/End: Original strand, 2730836 - 2730864
Alignment:
| Q |
316 |
ccactatttgacaacactttgtactaaat |
344 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2730836 |
ccactatttgacaacactttgtactaaat |
2730864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Original strand, 42492303 - 42492331
Alignment:
| Q |
317 |
cactatttgacaacactttgtactaaatt |
345 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42492303 |
cactatttgacaacactttgtactaaatt |
42492331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 344
Target Start/End: Original strand, 23165549 - 23165577
Alignment:
| Q |
316 |
ccactatttgacaacactttgtactaaat |
344 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23165549 |
ccactatttgacaacactttgtactaaat |
23165577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 344
Target Start/End: Complemental strand, 48957923 - 48957895
Alignment:
| Q |
316 |
ccactatttgacaacactttgtactaaat |
344 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
48957923 |
ccactatttgacaacactttgtactaaat |
48957895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 344
Target Start/End: Original strand, 28044712 - 28044740
Alignment:
| Q |
316 |
ccactatttgacaacactttgtactaaat |
344 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28044712 |
ccactatttgacaacactttgtactaaat |
28044740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University