View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14983_low_9 (Length: 373)
Name: NF14983_low_9
Description: NF14983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14983_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 98 - 359
Target Start/End: Complemental strand, 30742119 - 30741853
Alignment:
| Q |
98 |
aattaaatgataatatagattttgattttattaaaatctaaaatatgaattttgaaatgtgtattggatcgttt-----gatccaatgtaagtgaccatg |
192 |
Q |
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| T |
30742119 |
aattaaatgataatatagattttgattttattaaaatctaaaatatgaattgtgaaatgtgtattggatcgtttcgtttgatccaatgtaagtgaccatg |
30742020 |
T |
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| Q |
193 |
tgactgtactagattacatgtgcaaagaatctaaattgaacattacaatgagtatatcaagaatatgttttcgagattagtttcttattattttaataaa |
292 |
Q |
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| T |
30742019 |
tgactgtactagattacatgtgcaaagaatctaaattgaacattacaatgagtatatcaagaatatgttttagagattagtttcttattattttaataaa |
30741920 |
T |
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| Q |
293 |
tttcatggaaatattggatttaaagatctggagtatatctaaagattagttttttattccacaattt |
359 |
Q |
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| T |
30741919 |
tttcatggaaatattggatttaaagatctggagtatatctaaagattagttttttattccacaattt |
30741853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 30742243 - 30742154
Alignment:
| Q |
1 |
ttttaggcttatgtagtattatctgcttgcttagcagttaccatgaaaaggggtaatgagaaaatctaaattatttactatatgtgtgta |
90 |
Q |
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| T |
30742243 |
ttttaggcttatgtagtattatctgcttgcttagcagttaccatgaaaaggggtaatgagaaaatctaaattatttactatatgtgtgta |
30742154 |
T |
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