View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14984_high_11 (Length: 294)
Name: NF14984_high_11
Description: NF14984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14984_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 277
Target Start/End: Complemental strand, 24400664 - 24400402
Alignment:
| Q |
15 |
ataggtagctattgcacaagaaaacaaggcaagtggccctccaatccatcctaattgagaaatactccatgccaaagacaaaacaccagaaccaataaca |
114 |
Q |
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| T |
24400664 |
ataggtagctattgcacaagaaaacaaggcaagtggccctccaatccatcctaattgagaaatactccatgccaaagacaaaacaccagaaccaataaca |
24400565 |
T |
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| Q |
115 |
gctgtgatgatatgagccacagcactttttacatttcctgcagaatttatgtcgaataaaacttcagtattcaaattcaagtatatgaaaatcaattggt |
214 |
Q |
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| T |
24400564 |
gctgtgatgatatgagccacagcactttttacatttcctgcagaatttatcccgaataaaacttcagtattcaaattcaagtatatgaaaatcaattggt |
24400465 |
T |
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| Q |
215 |
tatgatgctatagagaattttacctgtccttttgggacgtccatcatcatcataaatatcaga |
277 |
Q |
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| T |
24400464 |
tatgatgctatagagaattttacctgtccttttggcacgtccgtcatcatcataaatatcaga |
24400402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 24377822 - 24377566
Alignment:
| Q |
14 |
cataggtagctattgcacaagaaaacaaggcaagtggccctccaatccatcctaattgagaaatactccatgccaaagacaaaacaccagaaccaataac |
113 |
Q |
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| T |
24377822 |
cataggtagctattgcacaagaaagtaatgcaagtggccctccaatccatcctagttgagcagtactccatgccaatgacaaaacaccagacccgataac |
24377723 |
T |
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| Q |
114 |
agctgtgatgatatgagccacagcactttttacatttcctgcagaatttat-gtcgaataaaacttcagtattcaaattcaagtatatgaaaatcaattg |
212 |
Q |
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| T |
24377722 |
accagtgatgatatgagccaaggcactctttaaatttcctgcagaatttgtagcaggataaaagcttagtattcaaatgcatgcatatgaaaatgaattg |
24377623 |
T |
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| Q |
213 |
gttatgatgctatagagaattttacctgtccttttgggacgtccatcatcatcataa |
269 |
Q |
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| T |
24377622 |
gttatgaagcaatttagaattttaccagtccttttggcatgtccatcatcatcataa |
24377566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 24413105 - 24412972
Alignment:
| Q |
23 |
ctattgcacaagaaaacaaggcaagtggccctccaatccatcctaattgagaaatactccatgccaaagacaaaacaccagaaccaataacagctgtgat |
122 |
Q |
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||||||||||| ||| ||||| || ||| |||||||||||||||||||||| | ||||||||||||| |||| |||||||||||||||||| |||||||| |
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| T |
24413105 |
ctattgcacaacaaagcaaggtaactggtcctccaatccatcctaattgagcagtactccatgccaatgacagaacaccagaaccaataactgctgtgat |
24413006 |
T |
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| Q |
123 |
gatatgagccacagcactttttacatttcctgca |
156 |
Q |
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| T |
24413005 |
gatatgagccacagcactctttaaatttcctgca |
24412972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 23 - 156
Target Start/End: Original strand, 24420936 - 24421069
Alignment:
| Q |
23 |
ctattgcacaagaaaacaaggcaagtggccctccaatccatcctaattgagaaatactccatgccaaagacaaaacaccagaaccaataacagctgtgat |
122 |
Q |
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||||||||||| ||| ||||| || ||| |||||||||||||||||||||| | ||||||||||||| |||| |||||||||||||||||| |||||||| |
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| T |
24420936 |
ctattgcacaacaaagcaaggtaactggtcctccaatccatcctaattgagcagtactccatgccaatgacagaacaccagaaccaataactgctgtgat |
24421035 |
T |
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| Q |
123 |
gatatgagccacagcactttttacatttcctgca |
156 |
Q |
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|||||||||||||||||| |||| |||||||||| |
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| T |
24421036 |
gatatgagccacagcactctttaaatttcctgca |
24421069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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