View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14984_high_21 (Length: 238)
Name: NF14984_high_21
Description: NF14984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14984_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 10713374 - 10713594
Alignment:
| Q |
1 |
ctctcgtgtccatgtaccactactcatcatgaggagttatagacagagtgtgcattctcttggtgtgtatgatggttgtgctgatgcgacatgtgcttca |
100 |
Q |
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| T |
10713374 |
ctcttgtgtccatgtaccactactcatcatgaggagttatagacagagtgtgcattctgttggtgtgtatgatggttgtgctgatgcgacatgtgcttca |
10713473 |
T |
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| Q |
101 |
tgtggtctatgcccaagaatgcctggttgacggttgagagcggctggttgctgccaatttccagttgtagggtatggacatggaagagtgacccatggag |
200 |
Q |
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| T |
10713474 |
tgtggtctatgcccaagaatgcctggttgacggttgagagcggctggttgctgccaatttccagttgtagggtatggacatggaagagtgacccatggag |
10713573 |
T |
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| Q |
201 |
gatatgaccaaggtggatatg |
221 |
Q |
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|||||| |||||||||||||| |
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| T |
10713574 |
gatatgcccaaggtggatatg |
10713594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 55155727 - 55155624
Alignment:
| Q |
60 |
ttggtgtgtatgatggttgtgctgatgcgacatgtgcttcatgtggtctatgcccaagaatgcctggttgacggttgagagcggctggttgctgccaatt |
159 |
Q |
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| T |
55155727 |
ttggtgtgtatgacggttgtgttgaagccatgtgtgcctgttgtggtctctgtctaagaatgcctggttggcggtttggagcgactgattgctgccaatt |
55155628 |
T |
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| Q |
160 |
tcca |
163 |
Q |
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| T |
55155627 |
tcca |
55155624 |
T |
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