View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14984_low_1 (Length: 621)

Name: NF14984_low_1
Description: NF14984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14984_low_1
NF14984_low_1
[»] chr6 (8 HSPs)
chr6 (286-533)||(16396656-16396904)
chr6 (16-262)||(16396412-16396669)
chr6 (527-601)||(16396923-16396997)
chr6 (527-603)||(16399710-16399786)
chr6 (267-348)||(30351445-30351529)
chr6 (459-505)||(16399624-16399670)
chr6 (218-258)||(14312861-14312900)
chr6 (535-579)||(15942726-15942770)
[»] chr8 (2 HSPs)
chr8 (528-603)||(14308058-14308133)
chr8 (239-278)||(9040920-9040959)
[»] chr4 (2 HSPs)
chr4 (286-349)||(5979790-5979854)
chr4 (249-360)||(4873041-4873155)
[»] chr2 (1 HSPs)
chr2 (287-348)||(13793680-13793742)
[»] chr5 (1 HSPs)
chr5 (292-356)||(14613541-14613606)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 286 - 533
Target Start/End: Original strand, 16396656 - 16396904
Alignment:
Q  286 ggtagttaactaccgttggggtgtttttagtc-tttccacgtgtttctaggaaacaatggatgttagaaaagaaatctccacttgttttaggtacatgta 384  Q
    |||||||||||||||||||||||||||||||| ||| ||||| ||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16396656 ggtagttaactaccgttggggtgtttttagtcattttcacgtatttctaaaaaacaatggatgttagaaaagcaatctccacttgttttaggtacatgta 16396755  T
Q  385 tttcaagagtggcagcattgctacatcgtggacatggtaagcaaactctactattgttctttcatgtaatattttcaaaacacagaaaactcggtgctca 484  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16396756 tttcaagagtggcagcattgctacatcatggacatggtaagcaaactctactattgttctttcatgtaatattttcaaaacacagaaaactcggtgctca 16396855  T
Q  485 ttcacatatatgaatattttctcaattctcatataccctttaacttgta 533  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16396856 ttcacatatatgaatattttctcaattctcatataccctttaacttgta 16396904  T

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Target: chr6; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 16396412 - 16396669
Alignment:
Q  16 gcatagggtgggaaaaagtaatagtcttgattttatgttactcagtgtaataagagaggatctttatttctcacctattctataatgtaatggtagcagg 115  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16396412 gcatagggtgggaaaa-gtaatagtcttgattttttgttactcagtgtaataagagaggatctttatttctcacctattctataatgtaatggtagcagg 16396510  T
Q  116 gtggnnnnnnnnn------------gtgttatatgggctttggccttttaattgtttcaaacgtggtacacttgtttgagtgttgttgttcgcacacgac 203  Q
    |||                      |||||||||| | |||||||||||||||||||||||  | ||||| |||||||||||||||||||||||||| ||    
T  16396511 gtgatttttttttttttttttttttgtgttatatgaggtttggccttttaattgtttcaaattttgtacatttgtttgagtgttgttgttcgcacacaac 16396610  T
Q  204 aagaattttctataaacatatggaaatgacaaaataaaactcaacggtagttaactacc 262  Q
    |||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||    
T  16396611 aagaattttctataaatatatggaaatgacaaaaaaaaactcagcggtagttaactacc 16396669  T

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Target: chr6; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 527 - 601
Target Start/End: Original strand, 16396923 - 16396997
Alignment:
Q  527 acttgtaggtaaatttctacagaaagacccttttggagttcaacaacaaattttcatcatcttatgagtgtcaaa 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16396923 acttgtaggtaaatttctacagaaagacccttttggagttcaacaacaaatttttatcatcttatgagtgtcaaa 16396997  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 527 - 603
Target Start/End: Original strand, 16399710 - 16399786
Alignment:
Q  527 acttgtaggtaaatttctacagaaagacccttttggagttcaacaacaaattttcatcatcttatgagtgtcaaacc 603  Q
    ||||||| |||||||||||||  |  | |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16399710 acttgtacgtaaatttctacaacagaaaccttttggagttcaacaacaaatttttatcatcttatgagtgtcaaacc 16399786  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 267 - 348
Target Start/End: Complemental strand, 30351529 - 30351445
Alignment:
Q  267 gttttctagtta--agttaaaggtagttaactaccgttggggtgtttttagtc-tttccacgtgtttctaggaaacaatggatgt 348  Q
    ||||||||||||  ||||| | ||||||||||||||||||||||||||| ||| ||| ||  ||||||||||||||||| |||||    
T  30351529 gttttctagttataagttagaagtagttaactaccgttggggtgtttttggtcattttcatatgtttctaggaaacaatagatgt 30351445  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 505
Target Start/End: Original strand, 16399624 - 16399670
Alignment:
Q  459 tcaaaacacagaaaactcggtgctcattcacatatatgaatattttc 505  Q
    ||||||||| ||||||||||| |||||| ||||||||| ||||||||    
T  16399624 tcaaaacaccgaaaactcggtactcatttacatatatgtatattttc 16399670  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 14312861 - 14312900
Alignment:
Q  218 aacatatggaaatgacaaaataaaactcaacggtagttaac 258  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  14312861 aacatatggaaatgaccaaa-aaaactcaacggtagttaac 14312900  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 579
Target Start/End: Complemental strand, 15942770 - 15942726
Alignment:
Q  535 gtaaatttctacagaaagacccttttggagttcaacaacaaattt 579  Q
    |||||||||| || || ||||| ||||||||||||||||||||||    
T  15942770 gtaaatttctgcaaaaggacccctttggagttcaacaacaaattt 15942726  T

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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 528 - 603
Target Start/End: Complemental strand, 14308133 - 14308058
Alignment:
Q  528 cttgtaggtaaatttctacagaaagacccttttggagttcaacaacaaattttcatcatcttatgagtgtcaaacc 603  Q
    |||||| ||||||||||||   | |||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  14308133 cttgtacgtaaatttctactacaggacccttttggaattcaacaacaatttttcatcatcttatgagtgtcaaacc 14308058  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 9040959 - 9040920
Alignment:
Q  239 aaaactcaacggtagttaactaccatcagttttctagtta 278  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  9040959 aaaactcagcggtagttaactatcatcagttttctagtta 9040920  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 5979790 - 5979854
Alignment:
Q  286 ggtagttaactaccgttggggtgtttttagtc-tttccacgtgtttctaggaaacaatggatgtt 349  Q
    |||||||||||||||||||||||||||| ||| ||||||  |||||||| ||||||||| |||||    
T  5979790 ggtagttaactaccgttggggtgtttttggtcatttccatttgtttctaagaaacaatgaatgtt 5979854  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 249 - 360
Target Start/End: Complemental strand, 4873155 - 4873041
Alignment:
Q  249 ggtagttaactaccatcagttttctagt--taagttaaaggtagttaactaccgttggggtgtttttagtc-tttccacgtgtttctaggaaacaatgga 345  Q
    ||||||||||||||||||||||||||||  ||||| |  ||||||||||||||| ||  ||||||||  || |||||| |||||| ||| ||| ||||||    
T  4873155 ggtagttaactaccatcagttttctagttataagtcagcggtagttaactaccgctgaagtgtttttgatcatttccatgtgtttttagaaaataatgga 4873056  T
Q  346 tgttagaaaagaaat 360  Q
     || | |||||||||    
T  4873055 agtcaaaaaagaaat 4873041  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 13793742 - 13793680
Alignment:
Q  287 gtagttaactaccgttggggtgtttttagtctttc-cacgtgtttctaggaaacaatggatgt 348  Q
    ||||||||||||||||||||||||||| ||| ||| ||  |||||||| ||||||||||||||    
T  13793742 gtagttaactaccgttggggtgtttttggtcattctcatatgtttctaagaaacaatggatgt 13793680  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 14613606 - 14613541
Alignment:
Q  292 taactaccgttggggtgtttttagtc-tttccacgtgtttctaggaaacaatggatgttagaaaag 356  Q
    ||||||||||||| |||||||| ||  ||| || |||||||||||||||||||||||  |||||||    
T  14613606 taactaccgttggagtgtttttggttattttcatgtgtttctaggaaacaatggatgcgagaaaag 14613541  T

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