View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14984_low_12 (Length: 349)

Name: NF14984_low_12
Description: NF14984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14984_low_12
NF14984_low_12
[»] chr3 (12 HSPs)
chr3 (198-334)||(48951766-48951902)
chr3 (1-114)||(48951969-48952082)
chr3 (2-90)||(27922005-27922096)
chr3 (22-89)||(27197316-27197383)
chr3 (23-90)||(27681871-27681938)
chr3 (21-87)||(40674170-40674239)
chr3 (22-90)||(19148231-19148302)
chr3 (22-90)||(29623300-29623371)
chr3 (13-81)||(32700378-32700449)
chr3 (22-90)||(48444569-48444640)
chr3 (22-90)||(45555697-45555765)
chr3 (31-79)||(54160893-54160941)
[»] chr4 (13 HSPs)
chr4 (10-90)||(32579230-32579310)
chr4 (22-90)||(46669891-46669962)
chr4 (22-90)||(52430521-52430592)
chr4 (21-90)||(40423019-40423091)
chr4 (8-89)||(55509927-55510011)
chr4 (22-90)||(27143242-27143313)
chr4 (22-79)||(43929762-43929822)
chr4 (26-89)||(368125-368191)
chr4 (199-231)||(18964905-18964937)
chr4 (23-90)||(28880056-28880126)
chr4 (13-96)||(39799473-39799559)
chr4 (10-54)||(45823597-45823641)
chr4 (22-89)||(50494601-50494671)
[»] chr7 (5 HSPs)
chr7 (23-90)||(3363675-3363742)
chr7 (22-90)||(22556650-22556718)
chr7 (2-96)||(23465940-23466037)
chr7 (52-90)||(45510439-45510477)
chr7 (22-90)||(1278002-1278073)
[»] chr1 (11 HSPs)
chr1 (4-90)||(36385384-36385474)
chr1 (2-90)||(25561264-25561355)
chr1 (54-96)||(3229299-3229341)
chr1 (11-81)||(27102779-27102852)
chr1 (197-231)||(28773549-28773583)
chr1 (22-90)||(5883550-5883620)
chr1 (197-230)||(14152578-14152611)
chr1 (22-90)||(43036269-43036340)
chr1 (2-90)||(50402785-50402876)
chr1 (23-90)||(37955243-37955313)
chr1 (27-90)||(42806239-42806305)
[»] chr5 (12 HSPs)
chr5 (22-96)||(15399879-15399956)
chr5 (17-89)||(2679833-2679908)
chr5 (22-90)||(3081278-3081349)
chr5 (22-96)||(43496821-43496898)
chr5 (21-90)||(29799700-29799772)
chr5 (22-90)||(6491248-6491319)
chr5 (30-90)||(6816295-6816358)
chr5 (22-90)||(19389774-19389845)
chr5 (2-89)||(8944089-8944179)
chr5 (22-81)||(15916947-15917009)
chr5 (58-90)||(27489842-27489874)
chr5 (23-90)||(39011897-39011966)
[»] chr6 (6 HSPs)
chr6 (11-96)||(20381806-20381894)
chr6 (4-90)||(33677070-33677158)
chr6 (22-90)||(15615731-15615798)
chr6 (2-89)||(33590276-33590366)
chr6 (22-90)||(2502312-2502383)
chr6 (22-89)||(28551842-28551912)
[»] chr2 (7 HSPs)
chr2 (51-96)||(6584759-6584804)
chr2 (8-90)||(9087411-9087496)
chr2 (22-90)||(4003472-4003543)
chr2 (10-90)||(5002733-5002816)
chr2 (198-235)||(19382754-19382791)
chr2 (21-90)||(12941743-12941816)
chr2 (49-81)||(30502132-30502164)
[»] chr8 (10 HSPs)
chr8 (8-90)||(10589854-10589939)
chr8 (4-90)||(39193977-39194066)
chr8 (22-91)||(10878727-10878799)
chr8 (24-89)||(14641463-14641529)
chr8 (21-90)||(41455322-41455394)
chr8 (22-90)||(32217-32288)
chr8 (22-90)||(27085412-27085483)
chr8 (21-54)||(40676865-40676898)
chr8 (10-46)||(4166636-4166672)
chr8 (44-88)||(33896508-33896552)
[»] scaffold0648 (1 HSPs)
scaffold0648 (22-79)||(7397-7457)
[»] scaffold0263 (1 HSPs)
scaffold0263 (22-90)||(12205-12276)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 198 - 334
Target Start/End: Complemental strand, 48951902 - 48951766
Alignment:
Q  198 cctcccctcccctccaatctcccaaacaaagtctttgtctcaaaccttttgcttgcttcatagtctacaaaggttatttttaaagtcttccctacttaat 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  48951902 cctcccctcccctccaatctcccaaacaaagtctttgtctcaaaccttttgcttgcttcatagtctagaaaggttatttttaaagtcttccctccttaat 48951803  T
Q  298 gtcgctcttagtcactgttggattgttgattcatgtg 334  Q
    |||||||||||||||||||||||||||||||||||||    
T  48951802 gtcgctcttagtcactgttggattgttgattcatgtg 48951766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 48952082 - 48951969
Alignment:
Q  1 tggttttgggggttttgaaaagtttatatgaattctttagatttaatttatgttataatattttcaaaatttaaaatatatcaatcataataattacgca 100  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||    
T  48952082 tggttttgggggttttaaaaagcttatatgaattctttagatttaatttatgttataatattctcaaaatttaaaatatatcaataataacaattacgca 48951983  T
Q  101 ctttatcattttct 114  Q
    ||||||||||||||    
T  48951982 ctttatcattttct 48951969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 27922005 - 27922096
Alignment:
Q  2 ggttttgggggttttgaaaagtttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataa 90  Q
    ||||||||||| ||||  | ||||| |||||||||| | ||||||||||||||   |||||||||| |||||| ||||||||| ||||||||    
T  27922005 ggttttggggggtttgggaggtttacatgaattcttcaaatttaatttatgttgttataatattttaaaaattaaaaatatattaatcataa 27922096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 27197316 - 27197383
Alignment:
Q  22 gtttatatgaattctttagatttaatttatgttataatattttcaaaatttaaaatatatcaatcata 89  Q
    |||||||||||||||| | ||||||||||||||||||||||||  ||||| || |||||  |||||||    
T  27197316 gtttatatgaattcttcaaatttaatttatgttataatattttttaaattaaatatatagtaatcata 27197383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 27681871 - 27681938
Alignment:
Q  23 tttatatgaattctttagatttaatttatgttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    ||||||||||||| | | ||||||| |||||||||||||| | |||||| ||||||||| ||||||||    
T  27681871 tttatatgaattcctcaaatttaatatatgttataatattcttaaaattaaaaatatattaatcataa 27681938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 40674170 - 40674239
Alignment:
Q  21 agtttatatgaattctttagatttaattta---tgttataatattttcaaaatttaaaatatatcaatca 87  Q
    ||||||||||||||||||| ||||||| ||   |||||||||||| | |||||| ||||||||| |||||    
T  40674170 agtttatatgaattctttaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatca 40674239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 19148231 - 19148302
Alignment:
Q  22 gtttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||||||| ||| | ||||||||||||||   |||||||| | |||||| ||||||||| ||||||||    
T  19148231 gtttatatgaatgcttcaaatttaatttatgttgttataatattcttaaaattaaaaatatattaatcataa 19148302  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 29623300 - 29623371
Alignment:
Q  22 gtttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||||||||||| | ||||||| ||||||   |||||||||| || ||| ||||||||| ||||||||    
T  29623300 gtttatatgaattcttcaaatttaatatatgttgttataatatttttaatattaaaaatatatgaatcataa 29623371  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 32700378 - 32700449
Alignment:
Q  13 ttttgaaaagtttatatgaattctttagatttaatttat---gttataatattttcaaaatttaaaatatat 81  Q
    |||||||| |||||||||||||||||   || |||||||   ||||||||||| | ||||||||||||||||    
T  32700378 ttttgaaaggtttatatgaattctttctgttcaatttatattgttataatattcttaaaatttaaaatatat 32700449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 48444569 - 48444640
Alignment:
Q  22 gtttatatgaattctttagatttaatttat---gttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||||||||| | | ||||||| |||   ||||||||||||| |||||| ||||||||| ||||||||    
T  48444569 gtttatatgaattcctcaaatttaatatatattgttataatatttttaaaattaaaaatatattaatcataa 48444640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 45555697 - 45555765
Alignment:
Q  22 gtttatatgaattctttagatttaatttatgttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    ||||||||||||| || | ||| ||| |||||||||||||| | |||||| ||| ||||| ||||||||    
T  45555697 gtttatatgaatttttcaaattcaatctatgttataatattcttaaaattaaaagtatattaatcataa 45555765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 54160941 - 54160893
Alignment:
Q  31 aattctttagatttaatttatgttataatattttcaaaatttaaaatat 79  Q
    |||||||  |||| ||| |||||||||||||||| ||||||||||||||    
T  54160941 aattcttctgattcaatctatgttataatatttttaaaatttaaaatat 54160893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 32579230 - 32579310
Alignment:
Q  10 gggttttgaaaagtttatatgaattctttagatttaatttatgttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    ||||||| || ||||||||| ||||||||| ||| |||||||||||||||||||| |||||| ||||||||| ||| ||||    
T  32579230 gggttttcaatagtttatataaattctttaaattcaatttatgttataatatttttaaaattaaaaatatattaattataa 32579310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 46669962 - 46669891
Alignment:
Q  22 gtttatatgaattctttagatttaattta---tgttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||||||||||||| ||||||| ||   |||||||||||| | |||||| ||||||||| ||||||||    
T  46669962 gtttatatgaattctttaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataa 46669891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 52430592 - 52430521
Alignment:
Q  22 gtttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||||||||||| | ||||||| ||||||   |||||||||| |||||| ||||||||| ||||||||    
T  52430592 gtttatatgaattcttcaaatttaatatatgttgttataatatttttaaaattaaaaatatattaatcataa 52430521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 40423091 - 40423019
Alignment:
Q  21 agtttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataa 90  Q
    ||||||||||||||||| | ||||||| ||||||   |||||||| | |||||| ||||||||| ||||||||    
T  40423091 agtttatatgaattcttcaaatttaatctatgttgttataatattcttaaaattaaaaatatattaatcataa 40423019  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 55509927 - 55510011
Alignment:
Q  8 gggggttttgaaaagtttatatgaattctttagatttaatttatgt---tataatattttcaaaatttaaaatatatcaatcata 89  Q
    |||||||||| |  |||||||||||||||| | ||||||| |||||   ||||||||||| |||||  |||||||| ||||||||    
T  55509927 gggggttttggagggtttatatgaattcttcaaatttaatctatgttgctataatatttttaaaataaaaaatatagcaatcata 55510011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 27143242 - 27143313
Alignment:
Q  22 gtttatatgaattctttagatttaatttat---gttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||||||||||| | ||||||| |||   ||||||||||| | |||||| ||||||||| ||||||||    
T  27143242 gtttatatgaattcttcaaatttaatatatattgttataatattcttaaaattaaaaatatattaatcataa 27143313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 43929822 - 43929762
Alignment:
Q  22 gtttatatgaattctttagattta--attta-tgttataatattttcaaaatttaaaatat 79  Q
    |||||||||||||||||| |||||  ||||| |||||||||||||| |||||| |||||||    
T  43929822 gtttatatgaattctttaaatttaatatttattgttataatatttttaaaattaaaaatat 43929762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 368125 - 368191
Alignment:
Q  26 atatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcata 89  Q
    |||||||||||| | ||||||||||||||   |||||||||| |||||| ||||||||  |||||||    
T  368125 atatgaattcttcaaatttaatttatgttgttataatatttttaaaattaaaaatatagtaatcata 368191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 18964905 - 18964937
Alignment:
Q  199 ctcccctcccctccaatctcccaaacaaagtct 231  Q
    |||||||||||||||| ||||||||||||||||    
T  18964905 ctcccctcccctccaaactcccaaacaaagtct 18964937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 28880056 - 28880126
Alignment:
Q  23 tttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataa 90  Q
    ||||||||||||||| | ||||||| ||||||   |||||||| | |||||| ||||||||| ||||||||    
T  28880056 tttatatgaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataa 28880126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 39799559 - 39799473
Alignment:
Q  13 ttttgaaaagtttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataataatta 96  Q
    ||||||||||||||||| ||||||| | |||  |||||||||   |||||||| | |||||| ||||||| | ||||||||| ||||    
T  39799559 ttttgaaaagtttatataaattcttcaaattacatttatgttgttataatattattaaaattaaaaatattttaatcataatcatta 39799473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 45823597 - 45823641
Alignment:
Q  10 gggttttgaaaagtttatatgaattctttagatttaatttatgtt 54  Q
    |||||||| | ||||||||||||||||| | ||||||||||||||    
T  45823597 gggttttggagagtttatatgaattcttcaaatttaatttatgtt 45823641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 50494671 - 50494601
Alignment:
Q  22 gtttatatgaattctttagatttaatttatgt---tataatattttcaaaatttaaaatatatcaatcata 89  Q
    |||||||||||||||| | |||||||||||||   ||||||| ||| |||||| ||||||||  |||||||    
T  50494671 gtttatatgaattcttcaaatttaatttatgttgatataatacttttaaaattaaaaatatagtaatcata 50494601  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 3363675 - 3363742
Alignment:
Q  23 tttatatgaattctttagatttaatttatgttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    ||||||||||||||||| ||||||| |||||||||||||| | |||||| ||||||||||||| ||||    
T  3363675 tttatatgaattctttaaatttaatatatgttataatattcttaaaattaaaaatatatcaattataa 3363742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 22556718 - 22556650
Alignment:
Q  22 gtttatatgaattctttagatttaatttatgttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||| |||||||| |||| ||||||| |||||||||||||| | |||||| ||||||||| ||||||||    
T  22556718 gtttctatgaattttttaaatttaatatatgttataatattcttaaaattaaaaatatattaatcataa 22556650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 23466037 - 23465940
Alignment:
Q  2 ggttttgggggttttgaaaagtttatatgaattctttagatttaatttat---gttataatattttcaaaatttaaaatatatcaatcataataatta 96  Q
    ||||||||||||||||||  ||||| ||| |||||| | |||||||||||   ||||||||||| | |||||| || |||||| |||||||| |||||    
T  23466037 ggttttgggggttttgaagggtttacatggattcttcacatttaatttatgtagttataatattcttaaaattaaatatatattaatcataagaatta 23465940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 45510439 - 45510477
Alignment:
Q  52 gttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  45510439 gttataatatttttaaaatttaaaatatattaatcataa 45510477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 1278002 - 1278073
Alignment:
Q  22 gtttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||||||||||| | ||||||| ||||||   |||||||| | |||||| ||||||||| ||||||||    
T  1278002 gtttatatgaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataa 1278073  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 36385384 - 36385474
Alignment:
Q  4 ttttgggggttttgaaa-agtttatatgaattctttagatttaattta---tgttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    ||||| ||| ||||||| ||||||||||||||||||| ||||||||||   |||||||||||||| |||||| ||||| ||| ||||||||    
T  36385384 ttttgagggatttgaaagagtttatatgaattctttaaatttaatttatgttgttataatatttttaaaattaaaaatgtattaatcataa 36385474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 25561355 - 25561264
Alignment:
Q  2 ggttttgggggttttgaaaagtttatatgaattctttagatttaatttatgttataatatt-ttc--aaaatttaaaatatatcaatcataa 90  Q
    |||||||||||||| | | ||||||||||||||||| | ||||||| |||||||| ||||| |||  |||||| ||||||||| ||||||||    
T  25561355 ggttttgggggtttgggagagtttatatgaattcttcaaatttaatatatgttattatattattcttaaaattaaaaatatattaatcataa 25561264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 3229341 - 3229299
Alignment:
Q  54 tataatattttcaaaatttaaaatatatcaatcataataatta 96  Q
    ||||||||||||||||||||||| |||||||| |||| |||||    
T  3229341 tataatattttcaaaatttaaaacatatcaattataagaatta 3229299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 27102852 - 27102779
Alignment:
Q  11 ggttttgaaaagtttatatgaattctttagatttaa--ttta-tgttataatattttcaaaatttaaaatatat 81  Q
    |||||||||| |||||||||||||||| | ||||||  |||| |||||||||||||| ||| || |||||||||    
T  27102852 ggttttgaaaggtttatatgaattcttcaaatttaatctttattgttataatatttttaaatttaaaaatatat 27102779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 28773549 - 28773583
Alignment:
Q  197 ccctcccctcccctccaatctcccaaacaaagtct 231  Q
    |||||||||||||||||| ||||||||||||||||    
T  28773549 ccctcccctcccctccaaactcccaaacaaagtct 28773583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 5883620 - 5883550
Alignment:
Q  22 gtttatatgaattctttagatttaattta---tgttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||||||||||| | ||||| ||||   |||||||||||||| |||||| ||||||||| ||||||||    
T  5883620 gtttatatgaattcttcaaatttactttagattgttataatatttt-aaaattaaaaatatattaatcataa 5883550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 14152611 - 14152578
Alignment:
Q  197 ccctcccctcccctccaatctcccaaacaaagtc 230  Q
    |||||||||||||||||| |||||||||||||||    
T  14152611 ccctcccctcccctccaaactcccaaacaaagtc 14152578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 43036340 - 43036269
Alignment:
Q  22 gtttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||||||||||| | ||||||| ||||||   |||||||| | |||||| ||||||||| ||||||||    
T  43036340 gtttatatgaattcttcaaatttaatctatgttgttataatattcttaaaattaaaaatatattaatcataa 43036269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 50402785 - 50402876
Alignment:
Q  2 ggttttgggggttttgaaaagtttatatgaattctttagatttaattta---tgttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    ||||||||||||| || || ||||||||||||| || | ||  ||| ||   |||||||||||||| |||||| ||||||||| ||||||||    
T  50402785 ggttttgggggttatggaaggtttatatgaatttttcaaatccaatctatgttgttataatatttttaaaattaaaaatatattaatcataa 50402876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 37955243 - 37955313
Alignment:
Q  23 tttatatgaattctttagatttaatttatgt---tataatattttcaaaatttaaaatatatcaatcataa 90  Q
    ||||||||||||||||| |||||||  ||||   ||||||||||| |||||| ||||||||  ||||||||    
T  37955243 tttatatgaattctttaaatttaatcgatgttgatataatatttttaaaattaaaaatatagtaatcataa 37955313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 42806239 - 42806305
Alignment:
Q  27 tatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataa 90  Q
    ||||||||||| | ||||||| ||||||   |||||||||| |||||  ||||||||||||||||||    
T  42806239 tatgaattcttcaaatttaatctatgttgttataatatttttaaaataaaaaatatatcaatcataa 42806305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 15399879 - 15399956
Alignment:
Q  22 gtttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataataatta 96  Q
    |||||||||||||||||| ||||||| | ||||   |||||||||| |||||| ||||||||| |||||||| |||||    
T  15399879 gtttatatgaattctttaaatttaatctttgttgttataatatttttaaaattaaaaatatattaatcataaaaatta 15399956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 2679908 - 2679833
Alignment:
Q  17 gaaaagtttatatgaattctttagatttaattta---tgttataatattttcaaaatttaaaatatatcaatcata 89  Q
    |||| |||||||||||||||||| ||||||| ||   |||||||||||||| |||||| ||||||||  |||||||    
T  2679908 gaaaggtttatatgaattctttaaatttaatctatgttgttataatatttttaaaattaaaaatatagtaatcata 2679833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 3081349 - 3081278
Alignment:
Q  22 gtttatatgaattctttagatttaatttatg---ttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||||||||||||| ||||||| ||||   |||||||||| | |||||| ||||||||| ||||||||    
T  3081349 gtttatatgaattctttaaatttaatatatgttcttataatattcttaaaattaaaaatatattaatcataa 3081278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 43496898 - 43496821
Alignment:
Q  22 gtttatatgaattctttagatttaattta---tgttataatattttcaaaatttaaaatatatcaatcataataatta 96  Q
    |||||||||||||||| | ||||||||||   |||||||||||||| |||||  ||||||||  ||||||||| ||||    
T  43496898 gtttatatgaattcttcaaatttaatttatgttgttataatatttttaaaataaaaaatatagtaatcataatcatta 43496821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 29799700 - 29799772
Alignment:
Q  21 agtttatatgaattctttagatttaatttatgttat---aatattttcaaaatttaaaatatatcaatcataa 90  Q
    ||||||||| ||||||| | ||||||| ||||||||   |||||||| |||||| ||||||||| ||||||||    
T  29799700 agtttatataaattcttcaaatttaatatatgttattataatatttttaaaattaaaaatatattaatcataa 29799772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 6491248 - 6491319
Alignment:
Q  22 gtttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||||||||||| | |||||| |||||||   |||||||| | |||||| ||||||||| ||||||||    
T  6491248 gtttatatgaattcttcaaatttaacttatgttgttataatattcttaaaattaaaaatatattaatcataa 6491319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 6816295 - 6816358
Alignment:
Q  30 gaattctttagatttaatttat---gttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||||| ||||||| |||   ||||||||||||| |||||| ||||||||| ||||||||    
T  6816295 gaattctttaaatttaatctatatagttataatatttttaaaattaaaaatatattaatcataa 6816358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 19389845 - 19389774
Alignment:
Q  22 gtttatatgaattctttagatttaatttatgt---tataatattttcaaaatttaaaatatatcaatcataa 90  Q
    ||||| |||||||||| | ||||||| |||||   ||||||||||| |||||| ||||||||| ||||||||    
T  19389845 gtttacatgaattcttcaaatttaatctatgtagttataatatttttaaaattaaaaatatattaatcataa 19389774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 8944089 - 8944179
Alignment:
Q  2 ggttttgggggttttgaaaagtttatatgaattctttagatttaattta---tgttataatattttcaaaatttaaaatatatcaatcata 89  Q
    |||||| ||||||||| || || ||||||||||||| | ||||||| ||   ||||||| |||||| |||||| ||||||||  |||||||    
T  8944089 ggtttttggggttttggaaggtgtatatgaattcttcaaatttaatatatgttgttatattattttaaaaattaaaaatatagtaatcata 8944179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 15916947 - 15917009
Alignment:
Q  22 gtttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatat 81  Q
    ||||||| |||||||||| ||||||| ||||||   |||||||| | ||||||||||||||||    
T  15916947 gtttatacgaattctttaaatttaatatatgttgttataatattcttaaaatttaaaatatat 15917009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 27489842 - 27489874
Alignment:
Q  58 atattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||||||||||||||||||| ||||||||    
T  27489842 atattttcaaaatttaaaatatattaatcataa 27489874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 39011897 - 39011966
Alignment:
Q  23 tttatatgaattctttagatttaatttat---gttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    ||||||||||||||| | ||||||| |||   ||||||||||||| |||||| ||||||||| ||||||||    
T  39011897 tttatatgaattcttaaaatttaatatatgtagttataatatttt-aaaattaaaaatatattaatcataa 39011966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 20381894 - 20381806
Alignment:
Q  11 ggttttgaaaagtttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataataatta 96  Q
    |||||||||  |||||||||||||||| |  |||||| ||||||   |||||||| | |||||| ||||||||||||||||||| ||||    
T  20381894 ggttttgaagggtttatatgaattcttcaattttaatatatgttgttataatattcttaaaattaaaaatatatcaatcataatcatta 20381806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 33677070 - 33677158
Alignment:
Q  4 ttttgggggttttgaaaagtttatatgaattctttagatttaat--ttatgttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    ||||||||||||   | ||||||||||||||||||| |||||||  |  |||||||||||| | |||||| ||||||||| ||||||||    
T  33677070 ttttgggggtttgagagagtttatatgaattctttaaatttaattgtgttgttataatattcttaaaattaaaaatatattaatcataa 33677158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 15615731 - 15615798
Alignment:
Q  22 gtttatatgaattctttagatttaatttatgttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||||||||||| | ||||||| | |||||||||||||| |||||| ||||||||| ||| ||||    
T  15615731 gtttatatgaattcttcaaatttaatctttgttataatatttt-aaaattaaaaatatattaattataa 15615798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 33590366 - 33590276
Alignment:
Q  2 ggttttgggggttttgaaaagtttatatgaattctttagatttaatttatg---ttataatattttcaaaatttaaaatatatcaatcata 89  Q
    |||||||||||||||| |  ||| |||||||||||| | ||||||| ||||   |||||||||||| |||||| ||||||||  |||||||    
T  33590366 ggttttgggggttttggagggttaatatgaattcttcaaatttaatctatgttattataatatttttaaaattaaaaatatagtaatcata 33590276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 2502383 - 2502312
Alignment:
Q  22 gtttatatgaattctttagatttaatttat---gttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||||||||||| | ||||||| |||   ||||||||||| | |||||| ||||||||| ||||||||    
T  2502383 gtttatatgaattcttcaaatttaatatatattgttataatattcttaaaattaaaaatatattaatcataa 2502312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 28551912 - 28551842
Alignment:
Q  22 gtttatatgaattctttagatttaattta---tgttataatattttcaaaatttaaaatatatcaatcata 89  Q
    |||||||||||||||| | ||||||||||   |||||||||||||| |||||| | ||||||  |||||||    
T  28551912 gtttatatgaattcttcaaatttaatttatgttgttataatatttttaaaattaacaatatagtaatcata 28551842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 6584804 - 6584759
Alignment:
Q  51 tgttataatattttcaaaatttaaaatatatcaatcataataatta 96  Q
    |||||||||||||| |||||||||||||||| |||||||| |||||    
T  6584804 tgttataatatttttaaaatttaaaatatattaatcataaaaatta 6584759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 9087496 - 9087411
Alignment:
Q  8 gggggttttgaaaagtttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||| | | ||||||||||||||||| | ||||||| ||||||   |||||||| | |||||| ||||||||| ||||||||    
T  9087496 gggggtttgggagagtttatatgaattcttcaaatttaatatatgttgtcataatattattaaaattaaaaatatattaatcataa 9087411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 4003472 - 4003543
Alignment:
Q  22 gtttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||| ||||||||| | ||||||||||||||   |||||||||| |||||| ||||||||  ||||||||    
T  4003472 gtttatgtgaattcttcaaatttaatttatgttgtaataatattttaaaaattaaaaatatagtaatcataa 4003543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 5002816 - 5002733
Alignment:
Q  10 gggttttgaaaagtttatatgaattctttagatttaatttat---gttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||| || | ||| |||||||||| | ||||||| |||   ||||||||||| | |||||| ||||||||||||||||||    
T  5002816 gggttttggaaggcttacatgaattcttcaaatttaatctatatagttataatattcttaaaattaaaaatatatcaatcataa 5002733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 19382791 - 19382754
Alignment:
Q  198 cctcccctcccctccaatctcccaaacaaagtctttgt 235  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  19382791 cctcccctcccctccaaactcccaaacaaagcctttgt 19382754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 12941816 - 12941743
Alignment:
Q  21 agtttatatgaattctttagatttaatttatgtt----ataatattttcaaaatttaaaatatatcaatcataa 90  Q
    ||||||||||||||||| | ||||||| ||||||    |||||||||| |||||| ||||||||| || |||||    
T  12941816 agtttatatgaattcttcaaatttaatatatgtttgttataatatttttaaaattaaaaatatattaaccataa 12941743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 30502164 - 30502132
Alignment:
Q  49 tatgttataatattttcaaaatttaaaatatat 81  Q
    |||||||||||||||| ||||||||||||||||    
T  30502164 tatgttataatatttttaaaatttaaaatatat 30502132  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 10589854 - 10589939
Alignment:
Q  8 gggggttttgaaaagtttatatgaattctttagatttaatttatgt---tataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||| | | ||||||||| |||| |||| ||||||| |||||   ||||||||||| |||||||||||||||| || |||||    
T  10589854 gggggtttgggagagtttatataaattttttaaatttaatctatgtagttataatatttttaaaatttaaaatatattaagcataa 10589939  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 39193977 - 39194066
Alignment:
Q  4 ttttgggggttttgaaaagtttatatgaattctttagatttaattta---tgttataatattttcaaaatttaaaatatatcaatcataa 90  Q
    ||||||||||||||||  |||||||||||||||| | ||||| | ||   |||||||||||| | || ||| ||||||||| ||||||||    
T  39193977 ttttgggggttttgaagggtttatatgaattcttcaaatttattctatgttgttataatattcttaatattaaaaatatatgaatcataa 39194066  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 10878799 - 10878727
Alignment:
Q  22 gtttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataat 91  Q
    |||||||||| ||||| | ||||||| ||||||   |||||||||| |||||| ||||||||| |||||||||    
T  10878799 gtttatatgagttcttcacatttaatatatgttgttataatatttttaaaattaaaaatatattaatcataat 10878727  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 14641463 - 14641529
Alignment:
Q  24 ttatatgaattctttagatttaatttatgttataatattttcaaaatt-taaaatatatcaatcata 89  Q
    |||||||||||||| | ||||||| ||||||||| |||||| ||||||  |||||||| ||||||||    
T  14641463 ttatatgaattcttcaaatttaatctatgttatattatttttaaaattaaaaaatatagcaatcata 14641529  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 41455322 - 41455394
Alignment:
Q  21 agtttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataa 90  Q
    ||||||||||||||||| | ||||||| ||||||   |||||||| | |||||| ||||||||| ||||||||    
T  41455322 agtttatatgaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataa 41455394  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 32217 - 32288
Alignment:
Q  22 gtttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||||||||||| | || |||||||||||   |||||||| | |||||| ||||||||| ||||||||    
T  32217 gtttatatgaattcttcaaatgtaatttatgttgttataatattcttaaaattaaaaatatattaatcataa 32288  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 27085412 - 27085483
Alignment:
Q  22 gtttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||||||||||| | ||||||| ||||||   ||||||||||  ||||| ||||||||| ||||||||    
T  27085412 gtttatatgaattcttcaaatttaatatatgttgttataatattttttaaattaaaaatatattaatcataa 27085483  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 40676898 - 40676865
Alignment:
Q  21 agtttatatgaattctttagatttaatttatgtt 54  Q
    ||||||||||||||||||| ||||||||||||||    
T  40676898 agtttatatgaattctttaaatttaatttatgtt 40676865  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 4166672 - 4166636
Alignment:
Q  10 gggttttgaaaagtttatatgaattctttagatttaa 46  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  4166672 gggttttgaaaggtttatatgaattctttaaatttaa 4166636  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 33896508 - 33896552
Alignment:
Q  44 taatttatgttataatattttcaaaatttaaaatatatcaatcat 88  Q
    |||| |||||||||||| |||||||||| ||||||||| ||||||    
T  33896508 taatatatgttataatactttcaaaattaaaaatatattaatcat 33896552  T

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Target: scaffold0648 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 7457 - 7397
Alignment:
Q  22 gtttatatgaattctttagattta--attta-tgttataatattttcaaaatttaaaatat 79  Q
    |||||||||||||||||| |||||  ||||| |||||||||||||| |||||| |||||||    
T  7457 gtttatatgaattctttaaatttaatatttattgttataatatttttaaaattaaaaatat 7397  T

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Target: scaffold0263 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 12276 - 12205
Alignment:
Q  22 gtttatatgaattctttagatttaatttatgtt---ataatattttcaaaatttaaaatatatcaatcataa 90  Q
    |||||||||||||||| | ||||||| ||||||   |||||||||| |||||| ||||||||  ||||||||    
T  12276 gtttatatgaattcttcaaatttaatctatgttgttataatatttttaaaattaaaaatatagtaatcataa 12205  T

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