View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14984_low_13 (Length: 327)
Name: NF14984_low_13
Description: NF14984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14984_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 50 - 327
Target Start/End: Original strand, 42798342 - 42798619
Alignment:
| Q |
50 |
tctctgcaagagcaagttattctttcttgatgccttgtctgttaaaccctgctgttagcaggtagagggagaacaccatcaaagaaatcaccaaaatagc |
149 |
Q |
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| T |
42798342 |
tctctgcaagagcaagttattctttcttgatgccttgtctgttaaaccctgctgttagcaggtagagggagaacaccatcaaagaaatcaccaaaatagc |
42798441 |
T |
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| Q |
150 |
cgtggggttcatgtactagccttgagatgatatctcttagtgtgattagtccttcaaggttcccatcatcatccacaacatagaccctgtgaatttgctc |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798442 |
cgtggggttcatgtactagccttgagatgatatctcttagtgtgattagtccttcaaggttcccatcatcatccacaacatagaccctgtgaatttgctc |
42798541 |
T |
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| Q |
250 |
tttgtcaagcaattgaatcaactctttcactgtacagtcccttttgcatgtaatgaattcacttgacattgggaatgc |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798542 |
tttgtcaagcaattgaatcaactctttcactgtacagtcccttttgcatgtaatgaattcacttgacattgggaatgc |
42798619 |
T |
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