View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14984_low_16 (Length: 285)

Name: NF14984_low_16
Description: NF14984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14984_low_16
NF14984_low_16
[»] chr2 (3 HSPs)
chr2 (1-280)||(8019963-8020242)
chr2 (7-90)||(22391337-22391420)
chr2 (187-245)||(22391574-22391632)
[»] chr3 (30 HSPs)
chr3 (1-109)||(28132152-28132260)
chr3 (1-109)||(28510616-28510724)
chr3 (7-109)||(27975560-27975662)
chr3 (1-109)||(28147936-28148044)
chr3 (7-109)||(28053683-28053785)
chr3 (7-109)||(28064108-28064210)
chr3 (1-109)||(28183969-28184077)
chr3 (1-106)||(28002380-28002485)
chr3 (4-109)||(28481444-28481549)
chr3 (1-109)||(28081945-28082053)
chr3 (1-109)||(28159405-28159513)
chr3 (7-109)||(28035636-28035738)
chr3 (4-109)||(27460990-27461092)
chr3 (7-109)||(27918580-27918682)
chr3 (1-109)||(11418933-11419041)
chr3 (185-247)||(28159634-28159696)
chr3 (7-56)||(17746167-17746216)
chr3 (7-56)||(19047487-19047536)
chr3 (178-248)||(28148170-28148242)
chr3 (186-247)||(28184199-28184260)
chr3 (111-238)||(28035806-28035932)
chr3 (183-243)||(28481226-28481286)
chr3 (183-243)||(28510407-28510467)
chr3 (1-56)||(27392230-27392285)
chr3 (180-247)||(28053934-28054000)
chr3 (180-247)||(28064359-28064425)
chr3 (187-243)||(28082191-28082247)
chr3 (7-49)||(12146232-12146274)
chr3 (108-238)||(28002553-28002682)
chr3 (184-248)||(27460800-27460864)
[»] scaffold0257 (3 HSPs)
scaffold0257 (7-109)||(17537-17639)
scaffold0257 (108-144)||(17704-17740)
scaffold0257 (179-211)||(17766-17798)
[»] chr7 (2 HSPs)
chr7 (183-248)||(8693152-8693216)
chr7 (1-109)||(8693277-8693385)
[»] scaffold0043 (1 HSPs)
scaffold0043 (4-90)||(54687-54773)


Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 8019963 - 8020242
Alignment:
Q  1 ctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019963 ctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaa 8020062  T
Q  101 atctaccaaaactatccctggcttcagcatcaacagcagacttcatatttgatattaatggtttatatgctagcaagtttggctacggtacacactctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020063 atctaccaaaactatccctggcttcagcatcaacagcagacttcatatttgatattaatggtttatatgctagcaagtttggctacggtacacactctat 8020162  T
Q  201 acaatatttttaaaaactattacacgttggctgtaaataattacatattattgcacatctttgaacttgaaaatgatgat 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020163 acaatatttttaaaaactattacacgttggctgtaaataattacatattattgcacatctttgaacttgaaaatgatgat 8020242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 22391337 - 22391420
Alignment:
Q  7 ataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgta 90  Q
    ||||| ||||||||| |||||||||||||||||||| ||||||  | |||||| |||||  | || |||||||| |||||||||    
T  22391337 ataagtgaagcatataagctagaggaaatatttgtatgtgaagaaggtgatcagaaagtcaatatgccaaatctaaaagttgta 22391420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 22391574 - 22391632
Alignment:
Q  187 ggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattaca 245  Q
    |||||||||| | | |||||||||| ||| |||||||| ||||||||||| ||||||||    
T  22391574 ggtacacactttgtccaatatttttgaaatctattacatgttggctgtaattaattaca 22391632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 28132152 - 28132260
Alignment:
Q  1 ctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaa 100  Q
    |||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28132152 ctgatcataagagaagcagacgagttagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaa 28132251  T
Q  101 atctaccaa 109  Q
    |||||||||    
T  28132252 atctaccaa 28132260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 28510724 - 28510616
Alignment:
Q  1 ctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaa 100  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  28510724 ctgatcataagagaagcagatgagttagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctaaaacttgtaatatttgaaa 28510625  T
Q  101 atctaccaa 109  Q
    |||||||||    
T  28510624 atctaccaa 28510616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 27975560 - 27975662
Alignment:
Q  7 ataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctac 106  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27975560 ataagagaagcagctgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgatagttgtaatatttgaaaatctac 27975659  T
Q  107 caa 109  Q
    |||    
T  27975660 caa 27975662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 28147936 - 28148044
Alignment:
Q  1 ctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaa 100  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  28147936 ctgatcataagagaagcagatgagttagaggaaatatttgtaagtgaatttgatgatcacaaagtggagattccaaatctaaaacttgtaatatttgaaa 28148035  T
Q  101 atctaccaa 109  Q
    |||||||||    
T  28148036 atctaccaa 28148044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 28053683 - 28053785
Alignment:
Q  7 ataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctac 106  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  28053683 ataagagaagcagatgagctagaggaaatatttgtaagtgaaagtgatgatcacaaagtggagattccaaatctaaaacttgtagtatttgaaaatctac 28053782  T
Q  107 caa 109  Q
    |||    
T  28053783 caa 28053785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 28064108 - 28064210
Alignment:
Q  7 ataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctac 106  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  28064108 ataagagaagcagatgagctagaggaaatatttgtaagtgaaagtgatgatcacaaagtggagattccaaatctaaaacttgtagtatttgaaaatctac 28064207  T
Q  107 caa 109  Q
    |||    
T  28064208 caa 28064210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 28183969 - 28184077
Alignment:
Q  1 ctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaa 100  Q
    ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||| |||||||||    
T  28183969 ctgatgataagagaagcagatgagctggaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctagaatgtgtagtatttgaaa 28184068  T
Q  101 atctaccaa 109  Q
    |||||||||    
T  28184069 atctaccaa 28184077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 28002380 - 28002485
Alignment:
Q  1 ctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaa 100  Q
    |||| ||||||||||||| | ||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||    
T  28002380 ctgaccataagagaagcagacgaggtagaggaaatatttggaagtgaaggtgatgatcacaaagtcgagattccaaatctaaaatttgtagtatttgaaa 28002479  T
Q  101 atctac 106  Q
    ||||||    
T  28002480 atctac 28002485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 28481549 - 28481444
Alignment:
Q  4 atcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatc 103  Q
    ||||||||||||||| | ||| | ||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||| ||||||||||||    
T  28481549 atcataagagaagcagacgagttcgaggaaatatttggaagtgaaggtgatgatcacaaagtcgagattccaaatctaaaatttgtagtatttgaaaatc 28481450  T
Q  104 taccaa 109  Q
    ||||||    
T  28481449 taccaa 28481444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 28081945 - 28082053
Alignment:
Q  1 ctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaa 100  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||   | ||||| |||||||||    
T  28081945 ctgatcataagagaagcagatgagttagaggaaatatttgtaagcgaaggtgatgatcacaaagtggagattccatatctacgatttgtagtatttgaaa 28082044  T
Q  101 atctaccaa 109  Q
    |||| ||||    
T  28082045 atcttccaa 28082053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 28159405 - 28159513
Alignment:
Q  1 ctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaa 100  Q
    ||||| ||||||||| || |||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||  ||  |||| |||||||||    
T  28159405 ctgatgataagagaatcagatgagctagaggaaatatttgtaattgaaggtgatgatcagaaagtgaagattccaaatctagaatgtgtagtatttgaaa 28159504  T
Q  101 atctaccaa 109  Q
    |||||||||    
T  28159505 atctaccaa 28159513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 28035636 - 28035738
Alignment:
Q  7 ataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctac 106  Q
    |||||||||||| || || | || |||||||||| |||||||||||||||||| |||||||||||||||||||| ||| ||||| | |||||||||||||    
T  28035636 ataagagaagcagataagatggaagaaatatttgcaagtgaaggtgatgatcagaaagtggagattccaaatctaaaatttgtagtgtttgaaaatctac 28035735  T
Q  107 caa 109  Q
    |||    
T  28035736 caa 28035738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 27461092 - 27460990
Alignment:
Q  4 atcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatc 103  Q
    |||||||||||||||   |||||||||||||||||||||||||||   |||||||| ||| |||||||||||||||| ||| ||||| |||||| |||||    
T  27461092 atcataagagaagca---gagctagaggaaatatttgtaagtgaaaaagatgatcagaaactggagattccaaatctaaaacttgtagtatttgtaaatc 27460996  T
Q  104 taccaa 109  Q
    ||||||    
T  27460995 taccaa 27460990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 27918580 - 27918682
Alignment:
Q  7 ataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctac 106  Q
    |||||||||||| ||||||| || |||||||||| || ||||||||||||||| ||||||||||||||||||||  ||  | || |||||||||||||||    
T  27918580 ataagagaagcagatgagctggatgaaatatttgcaaatgaaggtgatgatcagaaagtggagattccaaatctagaatatctagtatttgaaaatctac 27918679  T
Q  107 caa 109  Q
    |||    
T  27918680 caa 27918682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 11418933 - 11419041
Alignment:
Q  1 ctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaa 100  Q
    ||||| |||||||| ||| |||||||||||||||||||||||||||||| |||| |||| |||   |||||||| ||||| ||| || || |||||||||    
T  11418933 ctgatgataagagacgcagatgagctagaggaaatatttgtaagtgaagatgatcatcagaaaagcgagattccgaatcttaaatttttagtatttgaaa 11419032  T
Q  101 atctaccaa 109  Q
    |||| ||||    
T  11419033 atctgccaa 11419041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 28159634 - 28159696
Alignment:
Q  185 acggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacata 247  Q
    |||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  28159634 acggtacacactctatccaatatttttaaaaactattacatgtttgctgtaaattattacata 28159696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 17746216 - 17746167
Alignment:
Q  7 ataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatga 56  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17746216 ataagagaagcatatgagctagaggaaatatttggaagtgaaggtgatga 17746167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 19047536 - 19047487
Alignment:
Q  7 ataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatga 56  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19047536 ataagagaagcatatgagctagaggaaatatttggaagtgaaggtgatga 19047487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 28148170 - 28148242
Alignment:
Q  178 tttggctacggtacacactctatacaatat--ttttaaaaactattacacgttggctgtaaataattacatat 248  Q
    ||||||||||||||| ||||||| ||||||  ||||||||||||||||| |||||| ||||||||||||||||    
T  28148170 tttggctacggtacagactctatccaatatatttttaaaaactattacatgttggccgtaaataattacatat 28148242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 28184199 - 28184260
Alignment:
Q  186 cggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacata 247  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  28184199 cggtacacactctatccaatatttttaaaaactattacatgtttgctgtaaattattacata 28184260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 28035806 - 28035932
Alignment:
Q  111 actatccctggcttcagcatcaacagcagacttcatatttgatattaatggtttatatgctagcaagtttggctacggtacacactctatacaatatttt 210  Q
    |||||| ||||||||| |||||||| || ||||   |  |||||||  |||||||||| || || |||||| ||||||||| |||||||| |||||||||    
T  28035806 actatctctggcttcatcatcaacaacaaactttgaaaatgatatttctggtttatattctggcgagtttgactacggtacgcactctatccaatatttt 28035905  T
Q  211 taaaaactattacacgttggctgtaaat 238  Q
    | |||||||||| | |||||||||||||    
T  28035906 t-aaaactattaaatgttggctgtaaat 28035932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 28481286 - 28481226
Alignment:
Q  183 ctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataatta 243  Q
    |||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||| ||||    
T  28481286 ctacggtacacattctatccaatattttttaaaactattacatgttggctgtaaattatta 28481226  T

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Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 28510467 - 28510407
Alignment:
Q  183 ctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataatta 243  Q
    |||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||| ||||    
T  28510467 ctacggtacacattctatccaatattttttaaaactattacatgttggctgtaaattatta 28510407  T

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Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 27392285 - 27392230
Alignment:
Q  1 ctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatga 56  Q
    |||||||||||||||||| ||||||||||||||||||||||| | |||| ||||||    
T  27392285 ctgatcataagagaagcagatgagctagaggaaatatttgtatgcgaagttgatga 27392230  T

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Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 28053934 - 28054000
Alignment:
Q  180 tggctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacata 247  Q
    |||||| |||||||||||||| ||||||| ||||||||||||| | ||||||||||||| ||||||||    
T  28053934 tggctatggtacacactctatccaatattcttaaaaactatta-atgttggctgtaaattattacata 28054000  T

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Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 28064359 - 28064425
Alignment:
Q  180 tggctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacata 247  Q
    |||||| |||||||||||||| ||||||| ||||||||||||| | ||||||||||||| ||||||||    
T  28064359 tggctatggtacacactctatccaatattcttaaaaactatta-atgttggctgtaaattattacata 28064425  T

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Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 28082191 - 28082247
Alignment:
Q  187 ggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataatta 243  Q
    |||||||| ||||| ||||||||||||||||||||||| |||| |||||||| ||||    
T  28082191 ggtacacattctatccaatatttttaaaaactattacatgttgactgtaaattatta 28082247  T

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Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 12146232 - 12146274
Alignment:
Q  7 ataagagaagcatatgagctagaggaaatatttgtaagtgaag 49  Q
    |||||||||||| ||||||||||||||||||||||| ||||||    
T  12146232 ataagagaagcaaatgagctagaggaaatatttgtatgtgaag 12146274  T

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Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 238
Target Start/End: Original strand, 28002553 - 28002682
Alignment:
Q  108 aaaactatccctggcttcagcatcaacagcagacttcatatttgatattaatggtttatatgctagcaagtttggctacggtacacactctatacaatat 207  Q
    ||||||||| ||| |||||||||||||||||||||||  |  |||||||  |||||||  | |   |  ||||| | | |||||||||||||| ||||||    
T  28002553 aaaactatctctgacttcagcatcaacagcagacttcgaaaatgatatttctggtttacgttcggtctggtttgacgagggtacacactctatccaatat 28002652  T
Q  208 ttttaaaaactattacacgttggctgtaaat 238  Q
    |||| |||||||||| | |||||||||||||    
T  28002653 tttt-aaaactattaaatgttggctgtaaat 28002682  T

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Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 27460864 - 27460800
Alignment:
Q  184 tacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacatat 248  Q
    ||||||||||||||||| |||| ||| | ||||  |||||| |||||||||||||| || |||||    
T  27460864 tacggtacacactctatccaatctttctgaaaatcattacatgttggctgtaaatatttgcatat 27460800  T

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Target: scaffold0257 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 17537 - 17639
Alignment:
Q  7 ataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaaatctac 106  Q
    |||||||||||| |||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||| ||| ||||| |||||||||||||||    
T  17537 ataagagaagcagatgagctagaggaaatatctgcaagtgaaggtgatgatcacaaaatggagattccaaatctaaaatttgtagtatttgaaaatctac 17636  T
Q  107 caa 109  Q
    |||    
T  17637 caa 17639  T

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Target: scaffold0257; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 17704 - 17740
Alignment:
Q  108 aaaactatccctggcttcagcatcaacagcagacttc 144  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  17704 aaaactatctctggcttcagcatcaacaccagacttc 17740  T

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Target: scaffold0257; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 17766 - 17798
Alignment:
Q  179 ttggctacggtacacactctatacaatattttt 211  Q
    |||||||||||||||||||||| ||||||||||    
T  17766 ttggctacggtacacactctatccaatattttt 17798  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 8693216 - 8693152
Alignment:
Q  183 ctacggtacacactctatacaatatttttaaaaactattacacgttggctgtaaataattacatat 248  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||    
T  8693216 ctacggtacacactctatccaatattttttaaa-ctattacacgttggctgtaaataattacatat 8693152  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 8693385 - 8693277
Alignment:
Q  1 ctgatcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgtaatatttgaaa 100  Q
    |||||||||||||||||| ||||||| || |||||||||| ||||||||||  |||| | ||||| ||||||||||||||  ||  |||| |||||||||    
T  8693385 ctgatcataagagaagcagatgagctggatgaaatatttgcaagtgaaggtcgtgatgagaaagtcgagattccaaatctagaatatgtagtatttgaaa 8693286  T
Q  101 atctaccaa 109  Q
    |||| ||||    
T  8693285 atcttccaa 8693277  T

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Target: scaffold0043 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 54773 - 54687
Alignment:
Q  4 atcataagagaagcatatgagctagaggaaatatttgtaagtgaaggtgatgatcacaaagtggagattccaaatctgaaagttgta 90  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||  | |||||| |||||  |  ||||||||||||||||||||    
T  54773 atcataagagaagcacatgagctagaggaaatatttgtatgtgaagaaggtgatcagaaagtcaatcttccaaatctgaaagttgta 54687  T

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