View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14984_low_2 (Length: 580)

Name: NF14984_low_2
Description: NF14984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14984_low_2
NF14984_low_2
[»] chr3 (18 HSPs)
chr3 (23-358)||(36364222-36364562)
chr3 (420-568)||(36364927-36365075)
chr3 (357-424)||(36364819-36364886)
chr3 (441-488)||(23918882-23918929)
chr3 (423-478)||(25129491-25129546)
chr3 (441-489)||(31766188-31766236)
chr3 (446-501)||(47979433-47979486)
chr3 (441-488)||(7012680-7012727)
chr3 (441-488)||(10852727-10852774)
chr3 (441-503)||(4984621-4984683)
chr3 (453-503)||(51285678-51285728)
chr3 (441-505)||(10853264-10853328)
chr3 (441-505)||(23496357-23496421)
chr3 (441-505)||(25848072-25848136)
chr3 (445-505)||(30809942-30810002)
chr3 (441-489)||(42644302-42644350)
chr3 (441-505)||(50664798-50664862)
chr3 (441-505)||(52813255-52813319)
[»] chr2 (11 HSPs)
chr2 (423-504)||(10918634-10918715)
chr2 (441-505)||(30007548-30007612)
chr2 (441-488)||(23359942-23359989)
chr2 (423-489)||(4007144-4007209)
chr2 (442-503)||(22882875-22882936)
chr2 (423-472)||(44439332-44439381)
chr2 (441-505)||(1945034-1945098)
chr2 (441-489)||(12110923-12110971)
chr2 (441-505)||(16467135-16467199)
chr2 (441-505)||(23267359-23267423)
chr2 (441-489)||(23377553-23377601)
[»] chr1 (15 HSPs)
chr1 (423-506)||(47978358-47978441)
chr1 (441-505)||(1199891-1199955)
chr1 (423-483)||(3887395-3887455)
chr1 (441-505)||(20800275-20800339)
chr1 (441-505)||(35569200-35569264)
chr1 (441-505)||(40352455-40352518)
chr1 (444-491)||(1416156-1416203)
chr1 (441-488)||(4347038-4347085)
chr1 (423-489)||(40642975-40643041)
chr1 (423-476)||(6953497-6953550)
chr1 (443-503)||(3134656-3134716)
chr1 (441-505)||(27801650-27801714)
chr1 (441-505)||(29441248-29441312)
chr1 (441-505)||(34718515-34718579)
chr1 (441-489)||(47981809-47981857)
[»] chr4 (15 HSPs)
chr4 (441-505)||(40335641-40335705)
chr4 (441-505)||(33574203-33574267)
chr4 (441-505)||(36150629-36150693)
chr4 (439-503)||(48045679-48045743)
chr4 (441-508)||(39438886-39438953)
chr4 (442-505)||(42944895-42944958)
chr4 (442-505)||(55638752-55638815)
chr4 (442-503)||(8607385-8607447)
chr4 (423-489)||(29778995-29779061)
chr4 (441-503)||(33843807-33843869)
chr4 (441-505)||(16566330-16566394)
chr4 (449-505)||(32238056-32238112)
chr4 (441-505)||(46926073-46926137)
chr4 (424-508)||(47733523-47733607)
chr4 (441-505)||(48550242-48550306)
[»] chr8 (6 HSPs)
chr8 (424-488)||(38516329-38516393)
chr8 (441-489)||(19649234-19649282)
chr8 (423-512)||(24183826-24183915)
chr8 (441-505)||(3465437-3465501)
chr8 (441-505)||(15206744-15206808)
chr8 (423-479)||(24776418-24776474)
[»] chr5 (14 HSPs)
chr5 (441-504)||(19784867-19784930)
chr5 (423-489)||(23647702-23647768)
chr5 (423-489)||(23810805-23810871)
chr5 (424-482)||(43438612-43438670)
chr5 (441-505)||(22482243-22482307)
chr5 (441-488)||(5969958-5970005)
chr5 (441-488)||(22811080-22811127)
chr5 (442-489)||(38045322-38045369)
chr5 (441-475)||(3748952-3748986)
chr5 (441-503)||(27021182-27021244)
chr5 (427-489)||(40910931-40910993)
chr5 (441-505)||(29922288-29922352)
chr5 (423-475)||(32421887-32421939)
chr5 (441-505)||(35847884-35847948)
[»] chr7 (7 HSPs)
chr7 (441-503)||(38494277-38494339)
chr7 (441-475)||(117861-117895)
chr7 (447-489)||(7169007-7169049)
chr7 (441-505)||(10371942-10372006)
chr7 (441-505)||(41715718-41715782)
chr7 (441-505)||(46541661-46541725)
chr7 (441-505)||(48459771-48459835)
[»] scaffold0172 (1 HSPs)
scaffold0172 (441-489)||(15270-15318)
[»] scaffold0015 (1 HSPs)
scaffold0015 (441-489)||(65540-65588)
[»] chr6 (1 HSPs)
chr6 (441-505)||(15151502-15151566)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 23 - 358
Target Start/End: Original strand, 36364222 - 36364562
Alignment:
Q  23 accgtgacgttccggcgccgggaagtggctgagctgaactcagtgatttattcattgctttgtaataannnnnnnnnn--gttagacagttttatgatga 120  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||              ||||||||||||||||| ||    
T  36364222 accgtgacgttccggcgccgggaagtggctgagctgaactgagtgatttattcattgctttgtaatttttatttttttttgttagacagttttatgacga 36364321  T
Q  121 taagtccattatttgggtgtgcattgtat-----caattaattatcttgggtgtcacctaggttgaggttattagatttattaacttgggcaattaaatt 215  Q
    |||||||||||||||||||||||||||||     ||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||     
T  36364322 taagtccattatttgggtgtgcattgtattgtatcaattaattatcttgggtgt-----aggttgaggttattagatttattaacttgggcaattaaata 36364416  T
Q  216 tgtttgtaaactaaatttcattttgaagatatgtattgcgattaaattttattgtcattattaatggttaacaatattcattttaaattgagtagtttac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36364417 tgtttgtaaactaaatttcattttgaagatatgtattgcgattaaattttattgtcattattaatggttaacaatattcattttaaattgagtagtttac 36364516  T
Q  316 tctaaagggtca---gattgactgattcaatatcagaagtctatta 358  Q
    ||||||||||||   |||||||||||||||||||||||||||||||    
T  36364517 tctaaagggtcagatgattgactgattcaatatcagaagtctatta 36364562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 420 - 568
Target Start/End: Original strand, 36364927 - 36365075
Alignment:
Q  420 attcttttacataaatacttgcaaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattcttataaaaactggac 519  Q
    ||||||||||||||||| |||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| || ||||| ||| ||    
T  36364927 attcttttacataaatatttgcaaacataaactactttacattcaacttacttttatccaaaattaatttactcaaaatcaattattgtaaaagctgaac 36365026  T
Q  520 caaacaaacactaaatttttatacacatcatattcatctctcatattca 568  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36365027 caaacatacactaaatttttatacacatcatattcatctctcatattca 36365075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 357 - 424
Target Start/End: Original strand, 36364819 - 36364886
Alignment:
Q  357 tatttaggtttcataaatcaactataaatagcgttggtttcaattctagaagttgtagaattgattct 424  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36364819 tatttaggtttcataaatcaactataaatggcgttggtttcaattctagaagttgtagaattgattct 36364886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 488
Target Start/End: Original strand, 23918882 - 23918929
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatt 488  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||||||    
T  23918882 caaacataaatcactttacattcaactcacttttaaccaaaattaatt 23918929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 478
Target Start/End: Complemental strand, 25129546 - 25129491
Alignment:
Q  423 cttttacataaatacttgcaaacataaaccactttacatttaactcacttttatcc 478  Q
    ||||||||||||||| | |||||||||| ||| ||||||| |||||||||||||||    
T  25129546 cttttacataaatacatccaaacataaatcacgttacattcaactcacttttatcc 25129491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 489
Target Start/End: Complemental strand, 31766236 - 31766188
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaattt 489  Q
    |||||||||| |||||||  || ||||||||||||||||||||||||||    
T  31766236 caaacataaatcactttaacttcaactcacttttatccaaaattaattt 31766188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 501
Target Start/End: Original strand, 47979433 - 47979486
Alignment:
Q  446 ataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaa 501  Q
    |||||||||||||| |||||||||||||||| |||||| |||||  ||||||||||    
T  47979433 ataaaccactttacgtttaactcacttttattcaaaatcaattt--tcaaaatcaa 47979486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Original strand, 7012680 - 7012727
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatt 488  Q
    |||||||||| ||||||||||| |||||||||||| ||||||| ||||    
T  7012680 caaacataaatcactttacattcaactcacttttaaccaaaatcaatt 7012727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 10852774 - 10852727
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatt 488  Q
    |||||||||| ||||||||||| |||||||||||| ||||||| ||||    
T  10852774 caaacataaatcactttacattcaactcacttttaaccaaaatcaatt 10852727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 503
Target Start/End: Original strand, 4984621 - 4984683
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaatt 503  Q
    |||||||||| || || |||| ||||||||||||| ||||||| ||||| |||||| ||||||    
T  4984621 caaacataaatcaattcacatctaactcacttttaaccaaaatcaattttctcaaattcaatt 4984683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 503
Target Start/End: Original strand, 51285678 - 51285728
Alignment:
Q  453 actttacatttaactcacttttatccaaaattaatttactcaaaatcaatt 503  Q
    |||||||||| |||||||||||| ||| ||| |||| ||||||||||||||    
T  51285678 actttacattcaactcacttttagccataataaattcactcaaaatcaatt 51285728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Complemental strand, 10853328 - 10853264
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || |||| ||| |||||||||||| ||||||| ||||  |||||| ||||||||    
T  10853328 caaacataaatcaatttatattaaactcacttttaaccaaaatcaattctctcaaactcaattct 10853264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 23496357 - 23496421
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || || ||||| |||||||||||| ||||||| ||||  |||||| ||||||||    
T  23496357 caaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaattct 23496421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 25848072 - 25848136
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || || | ||| |||||||||||  ||||||||||||| |||||| ||||||||    
T  25848072 caaacataaatcaattcatattaaactcactttttaccaaaattaattttctcaaactcaattct 25848136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 505
Target Start/End: Complemental strand, 30810002 - 30809942
Alignment:
Q  445 cataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||| || || |||||||||||||||||| ||||| | |||||  ||||||||||||||    
T  30810002 cataaatcaattcacatttaactcacttttaaccaaactcaattttatcaaaatcaattct 30809942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 489
Target Start/End: Original strand, 42644302 - 42644350
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaattt 489  Q
    |||||||||| ||||||||||| |||||||||||| | ||||| |||||    
T  42644302 caaacataaatcactttacattcaactcacttttaactaaaatcaattt 42644350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 50664798 - 50664862
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || || ||||| |||||||||||| ||||||| ||||  |||||| ||||||||    
T  50664798 caaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaattct 50664862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 52813255 - 52813319
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    ||||||||||||||||||    |||||||||| || ||||||| |||| ||||||| ||||||||    
T  52813255 caaacataaaccactttagtcataactcacttctaaccaaaatcaattcactcaaactcaattct 52813319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 423 - 504
Target Start/End: Original strand, 10918634 - 10918715
Alignment:
Q  423 cttttacataaatacttgcaaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattc 504  Q
    |||||||| |||||| | |||||||||| ||||||||||| |||||||||||||||||||| |||| | ||||||| |||||    
T  10918634 cttttacacaaatacatccaaacataaatcactttacattcaactcacttttatccaaaatcaattcagtcaaaattaattc 10918715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 505
Target Start/End: Complemental strand, 30007612 - 30007548
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || || ||||| |||||||||||| ||||||||||||  |||||| ||||||||    
T  30007612 caaacataaatcaattcacattcaactcacttttaaccaaaattaattctctcaaactcaattct 30007548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 23359989 - 23359942
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatt 488  Q
    |||||||||| ||||||||||| |||||||||||| ||||||| ||||    
T  23359989 caaacataaatcactttacattcaactcacttttaaccaaaatcaatt 23359942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 489
Target Start/End: Complemental strand, 4007209 - 4007144
Alignment:
Q  423 cttttacataaatacttgcaaacataaaccactttacatttaactcacttttatccaaaattaattt 489  Q
    ||||||||||||||| | ||||||||||  ||||| |||| |||||||||||||||| ||| |||||    
T  4007209 cttttacataaatacat-caaacataaattacttttcattcaactcacttttatccataatcaattt 4007144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 503
Target Start/End: Original strand, 22882875 - 22882936
Alignment:
Q  442 aaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaatt 503  Q
    ||||||||| ||||| |||||||||| | ||||||||  ||| |||||| ||||||||||||    
T  22882875 aaacataaatcacttaacatttaacttatttttatcctgaatcaatttattcaaaatcaatt 22882936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 472
Target Start/End: Original strand, 44439332 - 44439381
Alignment:
Q  423 cttttacataaatacttgcaaacataaaccactttacatttaactcactt 472  Q
    |||||||||||| |  | |||||||||| |||||||||||||||||||||    
T  44439332 cttttacataaacatatccaaacataaatcactttacatttaactcactt 44439381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Complemental strand, 1945098 - 1945034
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || || ||||| |||||||||||| ||||||| ||||  |||||| ||||||||    
T  1945098 caaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaattct 1945034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 489
Target Start/End: Original strand, 12110923 - 12110971
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaattt 489  Q
    |||||||||| ||||||| ||| |||||||||||| ||||||| |||||    
T  12110923 caaacataaatcactttatattcaactcacttttaaccaaaatcaattt 12110971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 16467135 - 16467199
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || ||||||| ||||||||||||| ||||||| ||||    |||||||||||||    
T  16467135 caaacataaatcaatttacatctaactcacttttaaccaaaatcaattatgccaaaatcaattct 16467199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Complemental strand, 23267423 - 23267359
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    ||||||||||||||||||    |||||||||| || ||||||| |||| ||||||| ||||||||    
T  23267423 caaacataaaccactttagtcataactcacttctaaccaaaatcaattcactcaaactcaattct 23267359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 489
Target Start/End: Original strand, 23377553 - 23377601
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaattt 489  Q
    |||||||||| ||  ||||||| |||||||||||| |||||||||||||    
T  23377553 caaacataaatcaacttacattcaactcacttttaaccaaaattaattt 23377601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 423 - 506
Target Start/End: Complemental strand, 47978441 - 47978358
Alignment:
Q  423 cttttacataaatacttgcaaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattctt 506  Q
    |||| |||||||||| | ||| |||||| ||||||||||| |||||||||||| ||||||| |||| ||||||||| |||||||    
T  47978441 ctttgacataaatacatccaaccataaatcactttacattcaactcacttttacccaaaatcaattcactcaaaatgaattctt 47978358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 1199891 - 1199955
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || || ||||| |||||||||||| ||||||||||||  |||||| ||||||||    
T  1199891 caaacataaatcaattcacattcaactcacttttaaccaaaattaattctctcaaactcaattct 1199955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 483
Target Start/End: Complemental strand, 3887455 - 3887395
Alignment:
Q  423 cttttacataaatacttgcaaacataaaccactttacatttaactcacttttatccaaaat 483  Q
    ||||||||||||||| | |||||||||| || |||||||| ||||||| |||||| |||||    
T  3887455 cttttacataaatacatccaaacataaaacattttacattgaactcacctttatctaaaat 3887395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 505
Target Start/End: Complemental strand, 20800339 - 20800275
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || || ||||| |||||||||||| ||||||| ||||  |||||||||||||||    
T  20800339 caaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaattct 20800275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 505
Target Start/End: Complemental strand, 35569264 - 35569200
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || || ||||| |||||||||||| ||||||| ||||  |||||||||||||||    
T  35569264 caaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaattct 35569200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 40352455 - 40352518
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| ||||||||||| |||||||||||| ||||||| || || | |||||||||||||    
T  40352455 caaacataaatcactttacattaaactcacttttaaccaaaatcaa-ttccacaaaatcaattct 40352518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 491
Target Start/End: Complemental strand, 1416203 - 1416156
Alignment:
Q  444 acataaaccactttacatttaactcacttttatccaaaattaatttac 491  Q
    ||||||| ||| ||||||| |||||||||||| |||||||||||||||    
T  1416203 acataaatcacgttacattaaactcacttttagccaaaattaatttac 1416156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Original strand, 4347038 - 4347085
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatt 488  Q
    |||||||||| ||||||||||| |||||||||||| ||||||| ||||    
T  4347038 caaacataaatcactttacattcaactcacttttaaccaaaatcaatt 4347085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 489
Target Start/End: Original strand, 40642975 - 40643041
Alignment:
Q  423 cttttacataaatacttgcaaacataaaccactttacatttaactcacttttatccaaaattaattt 489  Q
    |||||||| |||||| | |||||||||| ||||||||||| ||||  || ||||||||||| |||||    
T  40642975 cttttacacaaatacgtccaaacataaatcactttacattcaacttgctcttatccaaaatcaattt 40643041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 476
Target Start/End: Complemental strand, 6953550 - 6953497
Alignment:
Q  423 cttttacataaatacttgcaaacataaaccactttacatttaactcacttttat 476  Q
    ||||||||||||||| | ||||||||||||| ||||||||  ||||| ||||||    
T  6953550 cttttacataaatacattcaaacataaaccattttacattctactcatttttat 6953497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 503
Target Start/End: Complemental strand, 3134716 - 3134656
Alignment:
Q  443 aacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaatt 503  Q
    |||||||| ||||||   || |||||||||||| ||| |||||||| ||||||||||||||    
T  3134716 aacataaatcactttgttttaaactcacttttaaccataattaattcactcaaaatcaatt 3134656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Complemental strand, 27801714 - 27801650
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || ||||||| |||||||||||||  |||||| ||||  || ||||||||||||    
T  27801714 caaacataaatcaatttacatctaactcacttttaatcaaaatcaattctcttaaaatcaattct 27801650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 29441248 - 29441312
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    ||||||||||||||||||    |||||||||| || ||||||| |||| ||||||| ||||||||    
T  29441248 caaacataaaccactttagtcataactcacttctaaccaaaatcaattcactcaaactcaattct 29441312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 34718515 - 34718579
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || |||| ||  |||||||||||| ||||||||||||  |||||| ||||||||    
T  34718515 caaacataaatcaatttatatcaaactcacttttaaccaaaattaattatctcaaactcaattct 34718579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 489
Target Start/End: Complemental strand, 47981857 - 47981809
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaattt 489  Q
    |||||||||| ||||||| ||| |||||| ||||| |||||||||||||    
T  47981857 caaacataaatcactttaaattcaactcaattttaaccaaaattaattt 47981809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 40335641 - 40335705
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| ||||||| |||||| ||||||||| |||||||||||||  ||||||||||||||    
T  40335641 caaacataaatcactttaaatttaattcacttttaaccaaaattaattttatcaaaatcaattct 40335705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 33574203 - 33574267
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || || ||||| |||||||||||| ||||||||||||  |||||| ||||||||    
T  33574203 caaacataaatcaattcacattcaactcacttttaaccaaaattaattctctcaaactcaattct 33574267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 36150629 - 36150693
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| ||||||||||| ||||||||||||  |||||| ||||   ||||||||||||||    
T  36150629 caaacataaatcactttacattcaactcacttttaatcaaaatcaattatatcaaaatcaattct 36150693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 503
Target Start/End: Complemental strand, 48045743 - 48045679
Alignment:
Q  439 tgcaaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaatt 503  Q
    |||||||||||| |||||||  || |||||| ||||| ||| ||| |||||||||||||||||||    
T  48045743 tgcaaacataaatcactttatcttcaactcagttttagccagaatcaatttactcaaaatcaatt 48045679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 508
Target Start/End: Original strand, 39438886 - 39438953
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattcttat 508  Q
    ||||||||||| |||| ||||| ||||||||||||   |||||||||| | |||||||||||| ||||    
T  39438886 caaacataaacaacttcacattcaactcacttttaagtaaaattaattcattcaaaatcaatttttat 39438953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 505
Target Start/End: Complemental strand, 42944958 - 42944895
Alignment:
Q  442 aaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    ||||||||| || || ||||| |||||||||||| ||||||| ||||  |||||||||||||||    
T  42944958 aaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaattct 42944895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 505
Target Start/End: Complemental strand, 55638815 - 55638752
Alignment:
Q  442 aaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    ||||||||| || ||||||||||||||||||||| | ||||| ||||  |||||| ||||||||    
T  55638815 aaacataaatcaatttacatttaactcacttttaacaaaaatcaattctctcaaactcaattct 55638752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 503
Target Start/End: Original strand, 8607385 - 8607447
Alignment:
Q  442 aaacataaaccactttacatttaactcacttttatccaaaa-ttaatttactcaaaatcaatt 503  Q
    ||||||||| || ||||  ||||||||||||||||  |||| |||||||||||||||||||||    
T  8607385 aaacataaatcaatttatgtttaactcacttttattgaaaaattaatttactcaaaatcaatt 8607447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 489
Target Start/End: Complemental strand, 29779061 - 29778995
Alignment:
Q  423 cttttacataaatacttgcaaacataaaccactttacatttaactcacttttatccaaaattaattt 489  Q
    |||||||| |||||| | |||| ||||| ||||||| ||| |||||||||||||||| ||| |||||    
T  29779061 cttttacacaaatacatccaaagataaatcactttatattcaactcacttttatccataatcaattt 29778995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 503
Target Start/End: Original strand, 33843807 - 33843869
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaatt 503  Q
    |||||||||| ||||||||||  |||||||||||| ||| ||| |||| | ||||||||||||    
T  33843807 caaacataaatcactttacatccaactcacttttagccagaatcaattcaatcaaaatcaatt 33843869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 16566330 - 16566394
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || || ||||| |||||||||||| ||||||| ||||  |||||| ||||||||    
T  16566330 caaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaattct 16566394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 505
Target Start/End: Complemental strand, 32238112 - 32238056
Alignment:
Q  449 aaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    ||||| || ||||| |||||||||||| ||||||| |||| ||||||| ||||||||    
T  32238112 aaccaattcacattcaactcacttttaaccaaaatcaattcactcaaactcaattct 32238056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 46926073 - 46926137
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || || |||| ||||||||||||| ||||||  ||||| |||||| ||||||||    
T  46926073 caaacataaatcaattcacatctaactcacttttaaccaaaaacaattttctcaaactcaattct 46926137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 508
Target Start/End: Complemental strand, 47733607 - 47733523
Alignment:
Q  424 ttttacataaatacttgcaaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattcttat 508  Q
    |||||||||||||| |  ||| ||| | || |||||||| |||| ||||||||||| ||| ||||  ||||||||||||| ||||    
T  47733607 ttttacataaatacatcaaaatatatatcattttacattcaactaacttttatccataatcaattccctcaaaatcaatttttat 47733523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 48550242 - 48550306
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || ||||||| |||||||||||||  |||||| ||||  || ||||||||||||    
T  48550242 caaacataaatcaatttacatctaactcacttttaatcaaaatcaattctcttaaaatcaattct 48550306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 38516329 - 38516393
Alignment:
Q  424 ttttacataaatacttgcaaacataaaccactttacatttaactcacttttatccaaaattaatt 488  Q
    |||||||||||||| | |||||||||| ||||||||||| |||||||| ||||| ||||| ||||    
T  38516329 ttttacataaatacatccaaacataaatcactttacattcaactcactattatcgaaaatcaatt 38516393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 489
Target Start/End: Original strand, 19649234 - 19649282
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaattt 489  Q
    |||||||||| ||||||||||| |||||||||||| ||||||| |||||    
T  19649234 caaacataaatcactttacattcaactcacttttaaccaaaatcaattt 19649282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 512
Target Start/End: Original strand, 24183826 - 24183915
Alignment:
Q  423 cttttacataaatacttgcaaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattcttataaaa 512  Q
    |||||||||| |||| | |||| ||||| || ||| |||| || ||| |||||| || ||| |||| |||||||||||||||| ||||||    
T  24183826 cttttacatatatacattcaaatataaatcatttttcattcaattcatttttattcagaatcaattcactcaaaatcaattctgataaaa 24183915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Complemental strand, 3465501 - 3465437
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    ||||||||||||||||||    |||||||||| || ||||||| |||| ||||||| ||||||||    
T  3465501 caaacataaaccactttagtcataactcacttctaaccaaaatcaattcactcaaactcaattct 3465437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 15206744 - 15206808
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || || ||||| |||||||||||| ||||||| |||||  ||||| ||||||||    
T  15206744 caaacataaatcaattcacattcaactcacttttacccaaaatcaattttgtcaaactcaattct 15206808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 479
Target Start/End: Original strand, 24776418 - 24776474
Alignment:
Q  423 cttttacataaatacttgcaaacataaaccactttacatttaactcacttttatcca 479  Q
    ||||||||||||| | | ||| |||||| ||||||||||| || |||||||||||||    
T  24776418 cttttacataaatgccttcaagcataaatcactttacattcaaatcacttttatcca 24776474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 504
Target Start/End: Original strand, 19784867 - 19784930
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattc 504  Q
    |||||||||||||||||||||| |||||||||||| ||||||| |||| |   |||||||||||    
T  19784867 caaacataaaccactttacattcaactcacttttaaccaaaatcaattcaaataaaatcaattc 19784930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 489
Target Start/End: Original strand, 23647702 - 23647768
Alignment:
Q  423 cttttacataaatacttgcaaacataaaccactttacatttaactcacttttatccaaaattaattt 489  Q
    ||||||| ||||||| | |||||||||| || |||||||||||  |||||| |||||||||||||||    
T  23647702 cttttacgtaaatacatccaaacataaatcattttacatttaatccactttcatccaaaattaattt 23647768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 489
Target Start/End: Complemental strand, 23810871 - 23810805
Alignment:
Q  423 cttttacataaatacttgcaaacataaaccactttacatttaactcacttttatccaaaattaattt 489  Q
    ||||||| ||||||| | |||||||||| || |||||||||||  |||||| |||||||||||||||    
T  23810871 cttttacgtaaatacatccaaacataaatcattttacatttaatccactttcatccaaaattaattt 23810805  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 482
Target Start/End: Complemental strand, 43438670 - 43438612
Alignment:
Q  424 ttttacataaatacttgcaaacataaaccactttacatttaactcacttttatccaaaa 482  Q
    |||||||||||||| | |||||||| |  ||||||||||||||||||||||||| ||||    
T  43438670 ttttacataaatacattcaaacatagataactttacatttaactcacttttatctaaaa 43438612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 22482243 - 22482307
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || || ||||| |||||||||||| ||||||| ||||  |||||||||||||||    
T  22482243 caaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaattct 22482307  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Complemental strand, 5970005 - 5969958
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatt 488  Q
    |||||||||| ||||||||||| ||||||||| |||||||||| ||||    
T  5970005 caaacataaatcactttacattcaactcacttatatccaaaatcaatt 5969958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 488
Target Start/End: Original strand, 22811080 - 22811127
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatt 488  Q
    |||||||||| ||||||||||| |||||||||||| ||||||| ||||    
T  22811080 caaacataaatcactttacattcaactcacttttaaccaaaatcaatt 22811127  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 489
Target Start/End: Original strand, 38045322 - 38045369
Alignment:
Q  442 aaacataaaccactttacatttaactcacttttatccaaaattaattt 489  Q
    ||||||| |||||||||||||||||||||||||| | ||||| |||||    
T  38045322 aaacatacaccactttacatttaactcacttttaactaaaatcaattt 38045369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 475
Target Start/End: Original strand, 3748952 - 3748986
Alignment:
Q  441 caaacataaaccactttacatttaactcactttta 475  Q
    |||||||||||||||||||||| ||||||||||||    
T  3748952 caaacataaaccactttacattaaactcactttta 3748986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 503
Target Start/End: Original strand, 27021182 - 27021244
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaatt 503  Q
    |||||||||| || || |||||||||||| ||||| ||||||| ||||| |||||| ||||||    
T  27021182 caaacataaatcaattcacatttaactcatttttaaccaaaatcaattttctcaaactcaatt 27021244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 489
Target Start/End: Complemental strand, 40910993 - 40910931
Alignment:
Q  427 tacataaatacttgcaaacataaaccactttacatttaactcacttttatccaaaattaattt 489  Q
    ||||||||||| | || ||||||| ||| ||||||| ||||||||||||| |||||| |||||    
T  40910993 tacataaatacattcatacataaaacacattacattcaactcacttttattcaaaataaattt 40910931  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 29922288 - 29922352
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||| |||||||| |||||||  ||||||||||||  |||||| |||||| |||| |||||||||    
T  29922288 caaaaataaaccattttacatccaactcacttttactcaaaatcaatttattcaatatcaattct 29922352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 475
Target Start/End: Complemental strand, 32421939 - 32421887
Alignment:
Q  423 cttttacataaatacttgcaaacataaaccactttacatttaactcactttta 475  Q
    ||||||||||||||| | |||||||||| |||||| |||| ||||||| ||||    
T  32421939 cttttacataaatacatccaaacataaatcacttttcattcaactcacattta 32421887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Complemental strand, 35847948 - 35847884
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    ||||||||||||||||||    |||||||||| || ||||||| |||| ||||||| ||||||||    
T  35847948 caaacataaaccactttagtcataactcacttctaaccaaaatcaattcactcaaactcaattct 35847884  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 503
Target Start/End: Original strand, 38494277 - 38494339
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaatt 503  Q
    |||||||||||||||| ||||| |||||||||||| ||||||| |||| |  |||||||||||    
T  38494277 caaacataaaccacttcacattcaactcacttttaaccaaaatcaattcaaacaaaatcaatt 38494339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 475
Target Start/End: Original strand, 117861 - 117895
Alignment:
Q  441 caaacataaaccactttacatttaactcactttta 475  Q
    |||||| ||||||||||||||||||||||||||||    
T  117861 caaacaaaaaccactttacatttaactcactttta 117895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 489
Target Start/End: Original strand, 7169007 - 7169049
Alignment:
Q  447 taaaccactttacatttaactcacttttatccaaaattaattt 489  Q
    |||||||||||||||| |||||||||||| ||||||| |||||    
T  7169007 taaaccactttacattcaactcacttttaaccaaaatcaattt 7169049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Complemental strand, 10372006 - 10371942
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || || ||||| |||||||||||| ||||||| ||||  |||||| ||||||||    
T  10372006 caaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaattct 10371942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 41715718 - 41715782
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || ||||||| |||||||||||||  |||||| ||||  || ||||||||||||    
T  41715718 caaacataaatcaatttacatctaactcacttttaatcaaaatcaattctcttaaaatcaattct 41715782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 46541661 - 46541725
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    ||||||||||||| || ||||| ||||||||| || ||||||| ||||  |||||| ||||||||    
T  46541661 caaacataaaccaattcacattcaactcacttctaaccaaaatcaattctctcaaactcaattct 46541725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Original strand, 48459771 - 48459835
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    |||||||||| || || ||||| |||||||||||| ||||||| ||||  |||||| ||||||||    
T  48459771 caaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaattct 48459835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 489
Target Start/End: Complemental strand, 15318 - 15270
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaattt 489  Q
    |||||||||| ||||||| ||| |||||||||||| ||||||| |||||    
T  15318 caaacataaatcactttatattcaactcacttttaaccaaaatcaattt 15270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 489
Target Start/End: Original strand, 65540 - 65588
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaattt 489  Q
    |||||||||| ||||||||||| |||||| ||||| ||||||| |||||    
T  65540 caaacataaatcactttacattaaactcatttttaaccaaaatcaattt 65588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 505
Target Start/End: Complemental strand, 15151566 - 15151502
Alignment:
Q  441 caaacataaaccactttacatttaactcacttttatccaaaattaatttactcaaaatcaattct 505  Q
    ||||||||||||||||||    |||||||||| || ||||||| |||| ||||||| ||||||||    
T  15151566 caaacataaaccactttagtcataactcacttctaaccaaaatcaattcactcaaactcaattct 15151502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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