View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14984_low_24 (Length: 243)
Name: NF14984_low_24
Description: NF14984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14984_low_24 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 35 - 243
Target Start/End: Complemental strand, 31941115 - 31940907
Alignment:
| Q |
35 |
cttaaatgaagataatcataactcatcgtattgtcattcaagtgtttgaataccttaccatttaaatcagttgtatattagttaaaagtagtgtgtagat |
134 |
Q |
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| T |
31941115 |
cttaaatgaagataattataactcatcgtattgttatttaagtgtttgaatacattaccatttagataagttgtatattagttaaaagtagtgtgtagat |
31941016 |
T |
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| Q |
135 |
ttaagaaagagaaatgatttaattctcttaacttaaataatttagatttttggtgaaatattgaaattaggactttttgttctaagttaagactcttttg |
234 |
Q |
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| T |
31941015 |
ttaagagagagaaatgatttaattctcttaacttaaataatttaggtttttggtgaaatattgaaattaggactttttgttttaagttaagactcttttg |
31940916 |
T |
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| Q |
235 |
agagactat |
243 |
Q |
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| T |
31940915 |
agagactat |
31940907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 68 - 211
Target Start/End: Complemental strand, 32000394 - 32000249
Alignment:
| Q |
68 |
tcattcaagtgtttgaataccttaccatttaaatcagttgtatattagttaaaagtagtgtgtagatttaagaaagaga--aatgatttaattctcttaa |
165 |
Q |
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||||| ||| || ||| |||||||| | ||| ||||||||||| ||||||||||||| ||||||||| |||| ||||| ||||||||||||||||||| |
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| T |
32000394 |
tcatttaagcgtctgagtaccttactacttagatcagttgtatgttagttaaaagtaacgtgtagattcaagagagagagaaatgatttaattctcttaa |
32000295 |
T |
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| Q |
166 |
cttaaataatttagatttttggtgaaatattgaaattaggactttt |
211 |
Q |
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| T |
32000294 |
cttaaataatttagatttttggtgaaatattgaaattaggactttt |
32000249 |
T |
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