View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14984_low_3 (Length: 499)
Name: NF14984_low_3
Description: NF14984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14984_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 54688556 - 54688077
Alignment:
| Q |
1 |
aataaccttttggattgttccttaaggctattagatgtgtgtagtgcagctaaagatgctttaattcacacaaaagaatgcacaagggaacttcaatccc |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54688556 |
aataaccttttggatggttccttaaggctattagatgtgtgtagtgcagctaaagatgctttaattcacacaaaagaatgcacaagggaacttcaatccc |
54688457 |
T |
|
| Q |
101 |
tcataagaagaagcaaaagaagaggaagcggtgaagtcgaactcacttcagaagttaagaagttcttgatatccaggaaggtagtgagaaagtcaatctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54688456 |
tcataagaagaagcaaaagaagaggaagcggtgaagtcgaactcacttcagaagttaagaagttcttgatatccaggaaggtagtgagaaagtcaatctc |
54688357 |
T |
|
| Q |
201 |
caaaaccttggtaaatttgaagggaaatgccaaaaatagcaacatcttatctacaaacaaagaccatcaaacagtggctttgattaacttattacaagat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54688356 |
caaaaccttggtaaatttgaagggaaatgccaaaaatagcaacatcttatctacaaacaaagaccatcaaacagtggctttgattaacttattacaagat |
54688257 |
T |
|
| Q |
301 |
gttgaagtggcaaccctatctacatttcagacaatattgcaatttatatcagggaccacacagtcaaagtcaaacagctggggttccatttccaagttaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54688256 |
gttgaagtggcaaccctatctacatttcaggcagtattgcaatttatatcagggaccacacagtcaaagtcaaacagctggggttccatttccaagctaa |
54688157 |
T |
|
| Q |
401 |
ttcagcccaaaagagtttcctgctccctagtggcagatgaaagtgaatttgcccaagtggatggagcattgcagtctttt |
480 |
Q |
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| T |
54688156 |
ttcagcccaaaagagtttcctgctccctagtggcagatgaaagtgaatttgcccaagtggatggagcattgcagtctttt |
54688077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 54700489 - 54700020
Alignment:
| Q |
1 |
aataaccttttggattgttccttaaggctattagatgtgtgtagtgcagctaaagatgctttaattcacacaaaagaatgcacaagggaacttcaatccc |
100 |
Q |
| |
|
|||||||| |||||| | |||||||||||||||||||||||||| ||||| |||||||||||| | || ||||||||||| |||||||||||||||||| |
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| T |
54700489 |
aataacctcttggatggatccttaaggctattagatgtgtgtagcgcagccaaagatgctttactgcatacaaaagaatgtacaagggaacttcaatcca |
54700390 |
T |
|
| Q |
101 |
tcataagaagaagcaaaagaagaggaagcggtgaagtcgaactcacttcagaagttaagaagttcttgatatccaggaaggtagtgagaaagtcaatctc |
200 |
Q |
| |
|
||||||||||||| ||| | || | | || |||||| |||| | |||||| ||| ||| ||| || |||||||||| |||| | ||||| |
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| T |
54700389 |
tcataagaagaagg---------gga---gatggattggagctcactgcagaggctaagaaattcatgacatcaagaaaggtagtgaaaaaggccatctc |
54700302 |
T |
|
| Q |
201 |
caaaaccttggtaaatttgaagggaaatgccaaaaatagcaacatcttatctacaaacaaagaccatcaaacagtggctttgattaacttattacaagat |
300 |
Q |
| |
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|||| |||||| |||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
54700301 |
caaagccttggcaaatttgaagggaaataccaaacatagcaacatcttatctacaaacaatgaccatcaaacagtggctttgattagcttattacaagat |
54700202 |
T |
|
| Q |
301 |
gttgaagtggcaaccctatctacatttcagacaatattgcaatttatatcagggaccacacagtcaaagtcaaacagctggggttccatttccaagttaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||| | | |
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| T |
54700201 |
gttgaagtggcaaccctatctacatttcagacaatattgcaatttatctcggggacaacacagtcaaaatcaaacagctggggttccatttccaaactta |
54700102 |
T |
|
| Q |
401 |
ttcagcccaaaagagtttcctgctccctagtggcagatgaaagtgaatttgcccaagtggatggagcattgcagtcttttgt |
482 |
Q |
| |
|
||||||| ||||||||| | ||||| ||| || ||||||||||||||||| |||||||||||| |||||||||||| ||||| |
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|
| T |
54700101 |
ttcagccgaaaagagttgcttgctcactattgacagatgaaagtgaattttcccaagtggatgtagcattgcagtcctttgt |
54700020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 178 - 483
Target Start/End: Complemental strand, 54692971 - 54692656
Alignment:
| Q |
178 |
aaggtagtgagaaagtcaatctccaaaaccttggtaaatttgaagggaaatgccaaaaatagcaacatcttatctacaaacaaagaccatcaaacagtgg |
277 |
Q |
| |
|
|||||||||| |||| | || |||||| ||||| |||||||||||| | | ||||| || |||||||| ||||||||||||||||||||| ||||| |
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| T |
54692971 |
aaggtagtgaaaaaggccatttccaaagccttgacaaatttgaagggcactaccaaatattataacatcttgtctacaaacaaagaccatcaatcagtga |
54692872 |
T |
|
| Q |
278 |
-----ctttgattaacttattacaagatgttgaagtggcaaccctatctacatttcagacaatattgcaatttatatcagggaccacacagtcaaagtca |
372 |
Q |
| |
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| ||||||||||||||||||||||||||| |||| || |||||||||||| ||| |||| ||||||| || ||||| | |||||||||||||||| |
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| T |
54692871 |
agtgacattgattaacttattacaagatgttgaattggctacactatctacatttgagataatactgcaattcatctcaggtagcacacagtcaaagtca |
54692772 |
T |
|
| Q |
373 |
aacagctggggttccatttccaagttaattcagcc---caaaagagtttcctgctccctagtggcagatgaaagtgaatttgcccaag--tggatggagc |
467 |
Q |
| |
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|||| ||| ||||||||||||| |||||||||| ||||||||||| ||||| ||| ||||||| || ||||||||| | |||| |||||| ||| |
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| T |
54692771 |
aacacttggctttccatttccaagctaattcagcctaataaaagagtttcttgctcactattggcagaagagagtgaattttctcaagtatggatgtagc |
54692672 |
T |
|
| Q |
468 |
attgcagtcttttgtg |
483 |
Q |
| |
|
|||||| || |||||| |
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| T |
54692671 |
attgcaatcctttgtg |
54692656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 54693102 - 54693016
Alignment:
| Q |
31 |
ttagatgtgtgtagtgcagctaa----agatgctttaattcacacaaaagaatgcacaagggaacttcaatccctcataagaagaag |
113 |
Q |
| |
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||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
54693102 |
ttagatgtgtgcagtgcagctaattaaagatgctttacttcacacaaaagaatgcacaagggaacttcagtccatcataagaagaag |
54693016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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