View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14984_low_30 (Length: 237)

Name: NF14984_low_30
Description: NF14984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14984_low_30
NF14984_low_30
[»] chr2 (3 HSPs)
chr2 (1-119)||(8019760-8019878)
chr2 (133-221)||(8019557-8019645)
chr2 (20-119)||(22391113-22391209)
[»] chr3 (26 HSPs)
chr3 (136-205)||(28183439-28183508)
chr3 (133-182)||(28081438-28081487)
chr3 (133-205)||(28147234-28147307)
chr3 (20-84)||(28081765-28081826)
chr3 (21-120)||(27918358-27918454)
chr3 (133-198)||(27974226-27974291)
chr3 (133-181)||(17746683-17746731)
chr3 (20-90)||(18026641-18026708)
chr3 (133-181)||(19048003-19048051)
chr3 (20-93)||(28147744-28147814)
chr3 (20-92)||(28131961-28132030)
chr3 (20-93)||(17746344-17746414)
chr3 (20-93)||(19047664-19047734)
chr3 (27-84)||(26180769-26180823)
chr3 (20-93)||(27461214-27461284)
chr3 (20-93)||(27975362-27975432)
chr3 (149-196)||(28482365-28482412)
chr3 (149-196)||(28511177-28511224)
chr3 (136-182)||(27918067-27918113)
chr3 (29-84)||(26210262-26210314)
chr3 (29-84)||(26237506-26237558)
chr3 (133-174)||(28053208-28053249)
chr3 (133-174)||(28063633-28063674)
chr3 (20-90)||(11418747-11418814)
chr3 (133-177)||(18026977-18027021)
chr3 (133-177)||(27392719-27392763)
[»] scaffold0257 (1 HSPs)
scaffold0257 (153-205)||(17021-17073)
[»] chr7 (1 HSPs)
chr7 (29-119)||(8693519-8693606)
[»] scaffold0043 (1 HSPs)
scaffold0043 (29-114)||(54907-54989)


Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 8019878 - 8019760
Alignment:
Q  1 tagctttggaaagcatgtttttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcatcttaagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8019878 tagctttggaaagcatgtttttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattctttgattctcatcttaagt 8019779  T
Q  101 aagtgaggtagacatctta 119  Q
    |||||||||||||||||||    
T  8019778 aagtgaggtagacatctta 8019760  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 8019645 - 8019557
Alignment:
Q  133 tccacattccccctcaattcctgcaataaatgaatgggaaataaacacatgcatatgataagaataaccaagtacaatagagatggtaa 221  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8019645 tccacattcctcctcaattcctgcaataaataaatgggaaataaacacatgcatatgataagaataaccaagtacaatagagatggtaa 8019557  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 22391209 - 22391113
Alignment:
Q  20 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcatcttaagtaagtgaggtagacatctta 119  Q
    |||||||||||||||| |||||||||||||   |||||||||| ||| || |||||||||||||| |||||||| | ||| || || |||||||| ||||    
T  22391209 tttgaggattttttattctccaaatcatct---tcaataatatgcttcaattctttgcattcttcaattctcatatcaagcaactgtggtagacacctta 22391113  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 28183508 - 28183439
Alignment:
Q  136 acattccccctcaattcctgcaataaatgaatgggaaataaacacatgcatatgataagaataaccaagt 205  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||    
T  28183508 acattcccactcaattcctgcaataaatgaatgggaaataaacacatgcataaaataagaataacaaagt 28183439  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 28081487 - 28081438
Alignment:
Q  133 tccacattccccctcaattcctgcaataaatgaatgggaaataaacacat 182  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28081487 tccacattcccactcaattcctgcaataaatgaatgggaaataaacacat 28081438  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 28147307 - 28147234
Alignment:
Q  133 tccacattccccctcaattcctgcaataaatgaatgggaaataaacac-atgcatatgataagaataaccaagt 205  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||  ||||||||||| ||||    
T  28147307 tccacattcccactcaattcctgtaataaatgaatgggaaataaacacaatgcataaaataagaataacaaagt 28147234  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 28081826 - 28081765
Alignment:
Q  20 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttc 84  Q
    |||||||||||||||| |||||||||||||   |||||||||| |||||||||||||||||||||    
T  28081826 tttgaggattttttattctccaaatcatct---tcaataatatgctttaactctttgcattcttc 28081765  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 27918454 - 27918358
Alignment:
Q  21 ttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcatcttaagtaagtgaggtagacatcttaa 120  Q
    ||||||||||||||| |||||||||||||   |||||||||| ||| ||||||||||||||||| ||||| || | ||| || || || |||||||||||    
T  27918454 ttgaggattttttattctccaaatcatct---tcaataatatacttcaactctttgcattcttcaattcttatatgaagcaactgcggcagacatcttaa 27918358  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 27974291 - 27974226
Alignment:
Q  133 tccacattccccctcaattcctgcaataaatgaatgggaaataaacacatgcatatgataagaata 198  Q
    ||||||||||| |||||||||| || |||| ||||| ||||||||||||||||||  |||||||||    
T  27974291 tccacattcccactcaattcctacagtaaacgaatgagaaataaacacatgcataaaataagaata 27974226  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 17746683 - 17746731
Alignment:
Q  133 tccacattccccctcaattcctgcaataaatgaatgggaaataaacaca 181  Q
    ||||||| ||| |||||||||||||||||||||||| ||||||||||||    
T  17746683 tccacatccccactcaattcctgcaataaatgaatgagaaataaacaca 17746731  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 18026641 - 18026708
Alignment:
Q  20 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattct 90  Q
    |||||||||||||||| ||||||||||||   ||||||||||| ||| ||||||||||| ||||| |||||    
T  18026641 tttgaggattttttattctccaaatcatc---ttcaataatatgcttcaactctttgcaatcttcaattct 18026708  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 19048003 - 19048051
Alignment:
Q  133 tccacattccccctcaattcctgcaataaatgaatgggaaataaacaca 181  Q
    ||||||| ||| |||||||||||||||||||||||| ||||||||||||    
T  19048003 tccacatccccactcaattcctgcaataaatgaatgagaaataaacaca 19048051  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 28147814 - 28147744
Alignment:
Q  20 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcat 93  Q
    |||||||||||||||| ||||||||||||   ||||||||||| | | ||||| ||||||||||| ||||||||    
T  28147814 tttgaggattttttattctccaaatcatc---ttcaataatatgcctcaactcattgcattcttcaattctcat 28147744  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 28132030 - 28131961
Alignment:
Q  20 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctca 92  Q
    |||||||||||||||| ||||||||||||   |||||| |||| ||| || |||||||||||||| |||||||    
T  28132030 tttgaggattttttattctccaaatcatc---ttcaattatatgcttcaattctttgcattcttcaattctca 28131961  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 17746344 - 17746414
Alignment:
Q  20 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcat 93  Q
    |||||||||||||||| |||||||||||||   |||| |||||   | ||||||||||||||||| ||||||||    
T  17746344 tttgaggattttttattctccaaatcatct---tcaaaaatatgtgtcaactctttgcattcttcaattctcat 17746414  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 19047664 - 19047734
Alignment:
Q  20 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcat 93  Q
    |||||||||||||||| |||||||||||||   |||| |||||   | ||||||||||||||||| ||||||||    
T  19047664 tttgaggattttttattctccaaatcatct---tcaaaaatatgtgtcaactctttgcattcttcaattctcat 19047734  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 26180769 - 26180823
Alignment:
Q  27 attttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttc 84  Q
    ||||||||||||||||||||||   |||||| |||| ||| |||||||||||||||||    
T  26180769 attttttatcctccaaatcatc---ttcaatgatatgcttcaactctttgcattcttc 26180823  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 27461214 - 27461284
Alignment:
Q  20 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcat 93  Q
    |||||||| ||||| | |||||||||||   ||||||| |||| ||| ||||||||||||||||| ||||||||    
T  27461214 tttgaggagtttttgttctccaaatcat---attcaattatatgcttcaactctttgcattcttcaattctcat 27461284  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 27975432 - 27975362
Alignment:
Q  20 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcat 93  Q
    |||||||||||| ||| |||||||||||   ||||||| |||| ||| ||||||||||| ||||| ||||||||    
T  27975432 tttgaggattttctattctccaaatcat---attcaattatatgcttcaactctttgcactcttcaattctcat 27975362  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 28482365 - 28482412
Alignment:
Q  149 attcctgcaataaatgaatgggaaataaacacatgcatatgataagaa 196  Q
    |||||| |||||||||||||||||||||||||||| |||  |||||||    
T  28482365 attcctacaataaatgaatgggaaataaacacatgtataaaataagaa 28482412  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 28511177 - 28511224
Alignment:
Q  149 attcctgcaataaatgaatgggaaataaacacatgcatatgataagaa 196  Q
    |||||| |||||||||||||||||||||||||||| |||  |||||||    
T  28511177 attcctacaataaatgaatgggaaataaacacatgtataaaataagaa 28511224  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 27918113 - 27918067
Alignment:
Q  136 acattccccctcaattcctgcaataaatgaatgggaaataaacacat 182  Q
    |||||||| ||||| ||||| |||||| |||||||||||||||||||    
T  27918113 acattcccactcaaatcctgtaataaacgaatgggaaataaacacat 27918067  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 26210262 - 26210314
Alignment:
Q  29 tttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttc 84  Q
    ||||||||||||||||||||   |||||| |||| ||| |||||||||||||||||    
T  26210262 tttttatcctccaaatcatc---ttcaatgatatgcttcaactctttgcattcttc 26210314  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 26237506 - 26237558
Alignment:
Q  29 tttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttc 84  Q
    ||||||||||||||||||||   |||||| |||| ||| |||||||||||||||||    
T  26237506 tttttatcctccaaatcatc---ttcaatgatatgcttcaactctttgcattcttc 26237558  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 28053249 - 28053208
Alignment:
Q  133 tccacattccccctcaattcctgcaataaatgaatgggaaat 174  Q
    |||||| |||| |||||||||||||||||||||||| |||||    
T  28053249 tccacaatcccactcaattcctgcaataaatgaatgtgaaat 28053208  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 28063674 - 28063633
Alignment:
Q  133 tccacattccccctcaattcctgcaataaatgaatgggaaat 174  Q
    |||||| |||| |||||||||||||||||||||||| |||||    
T  28063674 tccacaatcccactcaattcctgcaataaatgaatgtgaaat 28063633  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 11418814 - 11418747
Alignment:
Q  20 tttgaggattttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattct 90  Q
    |||||||| ||||||| |||||| ||||||   ||||| |||| ||| ||||||||||||||||| |||||    
T  11418814 tttgaggaatttttattctccaagtcatct---tcaatcatatgcttcaactctttgcattcttcaattct 11418747  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 18026977 - 18027021
Alignment:
Q  133 tccacattccccctcaattcctgcaataaatgaatgggaaataaa 177  Q
    ||||||||||| ||| |||||||| | ||||||||||||||||||    
T  18026977 tccacattcccactccattcctgccacaaatgaatgggaaataaa 18027021  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 27392719 - 27392763
Alignment:
Q  133 tccacattccccctcaattcctgcaataaatgaatgggaaataaa 177  Q
    ||||||||||| ||| |||||||| | ||||||||||||||||||    
T  27392719 tccacattcccgctcgattcctgccacaaatgaatgggaaataaa 27392763  T

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Target: scaffold0257 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 17073 - 17021
Alignment:
Q  153 ctgcaataaatgaatgggaaataaacacatgcatatgataagaataaccaagt 205  Q
    ||||||||||||||||||||||||||||||| |||  ||||||||||| ||||    
T  17073 ctgcaataaatgaatgggaaataaacacatgtataaaataagaataacaaagt 17021  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 8693519 - 8693606
Alignment:
Q  29 tttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcatcttaagtaagtgaggtagacatctta 119  Q
    ||||||| |||||||||||||   |||||||||| ||| ||||||||||||||||| |||||||| | ||| || || |||||||| ||||    
T  8693519 tttttattctccaaatcatct---tcaataatatgcttcaactctttgcattcttcaattctcatataaagcaactgtggtagacacctta 8693606  T

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Target: scaffold0043 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 54907 - 54989
Alignment:
Q  29 tttttatcctccaaatcatctaattcaataatattctttaactctttgcattcttcgattctcatcttaagtaagtgaggtagaca 114  Q
    ||||||| |||||||||||||   ||||| |||| ||| ||||||||||||||||| ||||| || | ||| || |||||||||||    
T  54907 tttttattctccaaatcatct---tcaatcatatgcttcaactctttgcattcttcaattcttatatgaagcaactgaggtagaca 54989  T

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