View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14984_low_35 (Length: 202)

Name: NF14984_low_35
Description: NF14984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14984_low_35
NF14984_low_35
[»] chr3 (10 HSPs)
chr3 (20-158)||(31484337-31484475)
chr3 (20-158)||(33005279-33005417)
chr3 (20-154)||(11824684-11824818)
chr3 (20-158)||(36090230-36090368)
chr3 (20-158)||(35713866-35714004)
chr3 (20-158)||(49565214-49565352)
chr3 (22-158)||(857495-857631)
chr3 (20-158)||(43508926-43509064)
chr3 (89-158)||(13457893-13457958)
chr3 (89-158)||(16648185-16648250)
[»] chr2 (14 HSPs)
chr2 (20-158)||(5000596-5000734)
chr2 (20-158)||(19820484-19820622)
chr2 (20-158)||(19840705-19840843)
chr2 (21-158)||(5012267-5012404)
chr2 (20-158)||(205033-205171)
chr2 (20-158)||(42110892-42111030)
chr2 (22-158)||(21590410-21590546)
chr2 (20-158)||(1918665-1918803)
chr2 (20-158)||(27999414-27999552)
chr2 (20-158)||(28090148-28090286)
chr2 (20-158)||(28096471-28096609)
chr2 (20-158)||(36439412-36439549)
chr2 (89-158)||(13900788-13900857)
chr2 (155-202)||(44846181-44846228)
[»] chr4 (6 HSPs)
chr4 (22-158)||(42345963-42346099)
chr4 (20-158)||(14147706-14147844)
chr4 (20-158)||(53286491-53286629)
chr4 (20-78)||(29362826-29362884)
chr4 (20-70)||(16906498-16906547)
chr4 (20-70)||(28380920-28380969)
[»] chr7 (6 HSPs)
chr7 (20-158)||(5091759-5091897)
chr7 (20-158)||(32657514-32657651)
chr7 (23-154)||(31098944-31099075)
chr7 (20-154)||(29955297-29955431)
chr7 (24-144)||(3066468-3066587)
chr7 (20-154)||(3061259-3061393)
[»] chr1 (6 HSPs)
chr1 (20-158)||(45506298-45506436)
chr1 (20-158)||(48959292-48959430)
chr1 (20-158)||(2051062-2051200)
chr1 (20-158)||(36870321-36870459)
chr1 (20-154)||(26210934-26211068)
chr1 (30-98)||(13928496-13928564)
[»] chr8 (3 HSPs)
chr8 (20-158)||(409384-409522)
chr8 (22-154)||(18489434-18489566)
chr8 (21-70)||(19958732-19958781)
[»] chr6 (5 HSPs)
chr6 (20-158)||(29370906-29371044)
chr6 (20-158)||(29373461-29373599)
chr6 (24-156)||(24457229-24457361)
chr6 (20-87)||(33006539-33006606)
chr6 (20-70)||(2277866-2277915)
[»] chr5 (4 HSPs)
chr5 (20-154)||(10038935-10039069)
chr5 (89-158)||(20108395-20108464)
chr5 (89-158)||(3611112-3611177)
chr5 (89-158)||(30093636-30093701)
[»] scaffold0160 (1 HSPs)
scaffold0160 (17-158)||(37157-37298)
[»] scaffold0374 (1 HSPs)
scaffold0374 (20-158)||(887-1025)


Alignment Details
Target: chr3 (Bit Score: 127; Significance: 9e-66; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 31484475 - 31484337
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31484475 agggggatcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaattgtccgtcacccacaaaaaccaaggtaatccaggca 31484376  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  31484375 ccaagattgattccgtaaaagtcacgaatcgctttccat 31484337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 33005279 - 33005417
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  33005279 agggggatcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatccaggca 33005378  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  33005379 ccaagatcgattccgtaaaagtcaagaatcgctttccat 33005417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 11824818 - 11824684
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  11824818 agggggatcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatccaggca 11824719  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgcttt 154  Q
    |||||||||||||||||||||||| ||||||||||    
T  11824718 ccaagatcgattccgtaaaagtcaagaatcgcttt 11824684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 36090230 - 36090368
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||    
T  36090230 agggggatcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaattcaggca 36090329  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  36090330 ccaagatcgattctataaaagtcacgaatcgctttccat 36090368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 35714004 - 35713866
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||| |||||||| ||| ||    
T  35714004 agggggatcaaaaaccgggttggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaacaaaggtaattcagaca 35713905  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35713904 ccaagatcgattccgtaaaagtcacgaatcgctttccat 35713866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 49565214 - 49565352
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||||||| ||||||    
T  49565214 agggggatcaaaaaccgggtaggggatactcttgtgaaacctatcagacaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaattcaggca 49565313  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  49565314 ccaagatcgattgtgtaaaagtcacgaatcgctttccat 49565352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 857631 - 857495
Alignment:
Q  22 ggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggcacc 121  Q
    ||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  857631 ggggatcaaaaactgggtagggtatactcttgtgaaacctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaaggtaatccaggcacc 857532  T
Q  122 aagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  857531 aagaccgatttcgtaaaagtcacgaatcgctttccat 857495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 43508926 - 43509064
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| |  ||||||||||||||||||||||||    
T  43508926 aggggggtcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcgctaacaaaaaccaaggtaatccaggca 43509025  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  43509026 ccaagatcgattccataaaattcacgaatcgctttccat 43509064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 13457893 - 13457958
Alignment:
Q  89 gtcacccacaaaaaccaaggtaatccaggcaccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||| |||||||||    
T  13457893 gtcacccacaaaaaccaaggt----caggcaccaagatcgattccgtaaaagtcacgaattgctttccat 13457958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 16648250 - 16648185
Alignment:
Q  89 gtcacccacaaaaaccaaggtaatccaggcaccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||| |||||||||    
T  16648250 gtcacccacaaaaaccaaggt----caggcaccaagatcgattccgtaaaagtcacgaattgctttccat 16648185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 2e-63; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 5000596 - 5000734
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  5000596 agggggatcaaaaaccaggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaattgtccgtcaccaacaaaaaccaaggtaatccaggca 5000695  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5000696 ccaagatcgattccgtaaaagtcacgaatcgctttccat 5000734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 19820622 - 19820484
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  19820622 agggggatcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatccaggca 19820523  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19820522 ccaagatcgattccgtaaaagtcacgaatcgctttccat 19820484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 19840843 - 19840705
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  19840843 agggggatcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatccaggca 19840744  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19840743 ccaagatcgattccgtaaaagtcacgaatcgctttccat 19840705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 8e-63
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 5012267 - 5012404
Alignment:
Q  21 gggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggcac 120  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  5012267 gggggatcaaaaaccaggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaattgtccgtcaccaacaaaaaccaaggtaatccaggcac 5012366  T
Q  121 caagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5012367 caagatcgattccgtaaaagtcacgaatcgctttccat 5012404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 205171 - 205033
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| || |||| |||||| ||||||||||||||||| ||||||    
T  205171 agggggatcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtgtatctaactgtccgtcaccaacaaaaaccaaggtaattcaggca 205072  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||||||||||||||||||    
T  205071 ccaagatcgattccgtaaaagtcacgaatcgctttccat 205033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 42110892 - 42111030
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||    
T  42110892 agggggatcaaaaaccaggtaggggatactcgtgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatccaggca 42110991  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  42110992 ccaagatcgattccgtaaaagtcaagaatcgctttccat 42111030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 21590410 - 21590546
Alignment:
Q  22 ggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggcacc 121  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||    
T  21590410 ggggatcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaattcaggcacc 21590509  T
Q  122 aagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  21590510 aagatcgattctgtaaaagtcacaaatcgctttccat 21590546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 1918665 - 1918803
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||| ||||||| ||||||| ||||||| ||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  1918665 aggggggtcaaaaatcgggtagaggatactcttgtgaaacctgtcagtcaaccgtatatcaaattgtccgtcacccacaaaaaccaaggtaatccaggca 1918764  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  1918765 ccaagaccgattccgtaaaagtcacgaatcgctttccat 1918803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 27999414 - 27999552
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||| | ||||||||||||| ||||||| ||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||    
T  27999414 agggggatcaaaaatcaggtaggggatactcttgtgaagcctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaaggtaatccaggca 27999513  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  27999514 ccaagaccgattctgtaaaagtcacgaatcgctttccat 27999552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 28090148 - 28090286
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||| | ||||||||||||| ||||||| ||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||    
T  28090148 agggggatcaaaaatcaggtaggggatactcttgtgaagcctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaaggtaatccaggca 28090247  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  28090248 ccaagaccgattctgtaaaagtcacgaatcgctttccat 28090286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 28096471 - 28096609
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||| | ||||||||||||| ||||||| ||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||    
T  28096471 agggggatcaaaaatcaggtaggggatactcttgtgaagcctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaaggtaatccaggca 28096570  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  28096571 ccaagaccgattctgtaaaagtcacgaatcgctttccat 28096609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 36439412 - 36439549
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||    
T  36439412 agggggatcaaaaaccaggtaggg-atactcttgtgaaacctatcagtcaactatatatcaaactgtctgtcaccaacaaaaaccaaggtaattcaggca 36439510  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  36439511 ccaagatcgattccgtaaaagtcacgaatcactttccat 36439549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 13900857 - 13900788
Alignment:
Q  89 gtcacccacaaaaaccaaggtaatccaggcaccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  13900857 gtcacccacaaaaaccaaggtaatccaggcaccaagatcgattccgtaaaagtcacgaattgttttccat 13900788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 44846181 - 44846228
Alignment:
Q  155 ccattttttgtgtgattatagctcccatcttttatctatatttgattt 202  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||    
T  44846181 ccatttttcgtgtgattatagcttccatcttttatctatatttgattt 44846228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 3e-62; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 42346099 - 42345963
Alignment:
Q  22 ggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggcacc 121  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||    
T  42346099 ggggatcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaatccaggcacc 42346000  T
Q  122 aagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||||||||||||||||    
T  42345999 aagatcgattccgtaaaagtcacgaatcgctttccat 42345963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 14147706 - 14147844
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| ||||  ||||||||||||||||||||||||||||||    
T  14147706 agggggatcaaaaaccaggtaggggatactcttgtgaaacctatcagtcaagtgtatatcaaactgtccatcacccacaaaaaccaaggtaatccaggca 14147805  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  14147806 ccaagatcgattccgtaaaagtcatgaatcgctttccat 14147844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 53286629 - 53286491
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||| ||||  ||||| |||||||| |||||||||||||||    
T  53286629 agggggatcaaaaactgggtaggggatactcttgtgaaagctatcagtcaactgcatatcaaactgtccttcaccaacaaaaactaaggtaatccaggca 53286530  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  53286529 ccaagatcgattccgtaaaattcacgaatcgctttccat 53286491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 29362826 - 29362884
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatat 78  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29362826 agggggataaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatat 29362884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 16906547 - 16906498
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaa 70  Q
    ||||||||||||||||| |||||||||| | |||||||| |||||||||||    
T  16906547 agggggatcaaaaaccgagtaggggataatcttgtgaaa-ctatcagtcaa 16906498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 28380969 - 28380920
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaa 70  Q
    ||||||||||||||||| |||||||||| | |||||||| |||||||||||    
T  28380969 agggggatcaaaaaccgagtaggggataatcttgtgaaa-ctatcagtcaa 28380920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 5e-61; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 5091897 - 5091759
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||    
T  5091897 agggggatcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaattcaggca 5091798  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5091797 ccaagatcgattccgtaaaagtcacgaatcgctttccat 5091759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 32657651 - 32657514
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |||| |||||| |||||||||||||||||  |||||    
T  32657651 agggggatcaaaaac-gggtaggggatactcttgtgaaacctatcagtcaactgtgtatcaaactgtccgtcaccaacaaaaaccaaggtaatttaggca 32657553  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32657552 ccaagatcgattccgtaaaagtcacgaatcgctttccat 32657514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 31099075 - 31098944
Alignment:
Q  23 gggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggcacca 122  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  31099075 gggatcaaaagccgggtatgggatactcttgtgaaacctatcagtcaaccgtatatcaaactgtctgtcacccacaaaaaccaaggtaatctaggcacca 31098976  T
Q  123 agatcgattccgtaaaagtcacgaatcgcttt 154  Q
    ||| |||||| |||||||||||||||||||||    
T  31098975 agaccgattctgtaaaagtcacgaatcgcttt 31098944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 29955431 - 29955297
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||  ||||||||||||| | ||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||| |||    
T  29955431 agggggatcaaaagtcgggtaggggatattcttgtgaaacctatcagtcaaccgtatatcaaactgtccgtcacccacaaaaaccaagataatccaagca 29955332  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgcttt 154  Q
    |||||| ||||||||||||||||||||||||||||    
T  29955331 ccaagaccgattccgtaaaagtcacgaatcgcttt 29955297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 144
Target Start/End: Original strand, 3066468 - 3066587
Alignment:
Q  24 ggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggcaccaa 123  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||  ||||||    
T  3066468 ggatcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaacggtatatcaaactgtctgtcacccacaaaaatcaaggtaatcca-acaccaa 3066566  T
Q  124 gatcgattccgtaaaagtcac 144  Q
    || |||||| |||||||||||    
T  3066567 gaccgattcggtaaaagtcac 3066587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 3061259 - 3061393
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||| ||||||| ||||||||||||| ||||||||||||||| ||||| |||||||||| |||  ||||||||||||| |||||||||||||||||    
T  3061259 agggggataaaaaaccaggtaggggatactcttgtgaaacctatcaatcaacggtatatcaaactgttcgtcacccacaaaatccaaggtaatccaggca 3061358  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgcttt 154  Q
    |||| | ||||||| |||||||| |||||||||||    
T  3061359 ccaaaaccgattccttaaaagtctcgaatcgcttt 3061393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 5e-61; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 45506298 - 45506436
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||    
T  45506298 agggggatcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaattcaggca 45506397  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||||||||||||||||||    
T  45506398 ccaagatcgattccgtaaaagtcacgaatcgctttccat 45506436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 48959430 - 48959292
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||    
T  48959430 agggggatcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcaccaacaaaaaccaaggtaattcaggca 48959331  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||||||||||||||||||    
T  48959330 ccaagatcgattccgtaaaagtcacgaatcgctttccat 48959292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 2051062 - 2051200
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||    
T  2051062 agggggatcaaaaaccgggtaggggatattcttgtgaaacctatcagtcaagtgtatatcaaactgtccgtcacccacaaaaaccaaggtaatccgggca 2051161  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2051162 ccaagatcgattccgtaaaagtcacgaatcgctttccat 2051200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 36870321 - 36870459
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||    
T  36870321 agggggatcaaaaaccgggtaggggatattcttgtgaaacctatcagtcaagtgtatatcaaactgtccgtcacccacaaaaaccaaggtaatccgggca 36870420  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36870421 ccaagatcgattccgtaaaagtcacgaatcgctttccat 36870459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 26211068 - 26210934
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||||||||||| |||||||||| |||| |||||||| |||||||||| ||||||||| |    
T  26211068 agggggatcaaaagccgggtaagggatactcttgtgaaacctatcagtcaaccgtatatcaaactgtccgtcacccataaaaaccaagataatccaggta 26210969  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgcttt 154  Q
    |||||| ||||||||||||| ||||||||||||||    
T  26210968 ccaagaccgattccgtaaaattcacgaatcgcttt 26210934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 13928496 - 13928564
Alignment:
Q  30 aaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccaca 98  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  13928496 aaaatcgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtccgtcacccaca 13928564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 409384 - 409522
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||    
T  409384 agggggatcaaaaaccaggtaggggatactcttgtgaaacctatcagtcaagtgtatatcaaactgtccgtcacccacaaaaaccaaggtaattcaggca 409483  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||||||||||||||||||    
T  409484 ccaagatcgattccgtaaaagtcacgaatcgctttccat 409522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 18489434 - 18489566
Alignment:
Q  22 ggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggcacc 121  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| |||| ||||||||||||||||||||||||||| | |||    
T  18489434 ggggatcaaaaaccgggtaggggatactcttgtgaaacctattagtcaacggtatatcaaactgtcagtcacccacaaaaaccaaggtaatccaagaacc 18489533  T
Q  122 aagatcgattccgtaaaagtcacgaatcgcttt 154  Q
    |||| ||||||| ||||||||||||||| ||||    
T  18489534 aagaccgattccataaaagtcacgaatcacttt 18489566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 19958781 - 19958732
Alignment:
Q  21 gggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaa 70  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  19958781 gggggatcaaaaaccgggtaggggatactcttgtgaaacctatcaatcaa 19958732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 29370906 - 29371044
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  29370906 agggggatcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactgtctgtcaccaacaaaaaccaaggtaatccaggca 29371005  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||| ||||||||||||||| |||||| |||||||    
T  29371006 ccaagatcaattccgtaaaagtcatgaatcgttttccat 29371044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 29373461 - 29373599
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    ||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  29373461 agggggatcaaaaactgggtatgggatactcttgtgaaacctatcagtcaactgtatatcaaaatgtctgtcaccaacaaaaaccaaggtaatccaggca 29373560  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  29373561 ccaagatcgattccgtaaaagtcaagaatcactttccat 29373599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 24457361 - 24457229
Alignment:
Q  24 ggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggcaccaa 123  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | || |||||| |||||||| |||||||||||||||||||    
T  24457361 ggatcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactgtatatcaaactatccgtcaccaacaaaaacaaaggtaatccaggcaccaa 24457262  T
Q  124 gatcgattccgtaaaagtcacgaatcgctttcc 156  Q
    |||||||||||||||||||| ||||||||||||    
T  24457261 gatcgattccgtaaaagtcaagaatcgctttcc 24457229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 33006539 - 33006606
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtc 87  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  33006539 agggggatcaaaaatcgggtaagggatactcttgtgaaacctatcagtcaactgtatatcaaactgtc 33006606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 2277915 - 2277866
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaa 70  Q
    ||||||||||||||||| |||||||||| | |||||||| |||||||||||    
T  2277915 agggggatcaaaaaccgagtaggggataatcttgtgaaa-ctatcagtcaa 2277866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 10039069 - 10038935
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| |||| | ||||||||||||||||||||||||    
T  10039069 aggggggtcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaactatatatcaaactgtccgtcatcaacaaaaaccaaggtaatccaggca 10038970  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgcttt 154  Q
    |||||||||||||||||||||||| ||||||||||    
T  10038969 ccaagatcgattccgtaaaagtcaagaatcgcttt 10038935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 20108395 - 20108464
Alignment:
Q  89 gtcacccacaaaaaccaaggtaatccaggcaccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  20108395 gtcacccacaaaaaccaaggtaatccaggcaccaagatcgattccgtaaaagtcacgaattgttttccat 20108464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 3611112 - 3611177
Alignment:
Q  89 gtcacccacaaaaaccaaggtaatccaggcaccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||| |||||||||    
T  3611112 gtcacccacaaaaaccaaggt----caggcaccaagatcgattccgtaaaagtcacgaattgctttccat 3611177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 30093636 - 30093701
Alignment:
Q  89 gtcacccacaaaaaccaaggtaatccaggcaccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||| |||||||||    
T  30093636 gtcacccacaaaaaccaaggt----caggcaccaagatcgattccgtaaaagtcacgaattgctttccat 30093701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 102; Significance: 7e-51; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 37298 - 37157
Alignment:
Q  17 caaagggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccag 116  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | ||| |||||||||||||||||||||||| ||    
T  37298 caaagggggatcaaaaaccgggtaggggatactcttgtgaaacctatcagtcaaccgtatatcaaactatctatcacccacaaaaaccaaggtaatctag 37199  T
Q  117 gcaccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    ||||||||| |||||  |||||||||| ||||||||||||||    
T  37198 gcaccaagaccgattgagtaaaagtcaggaatcgctttccat 37157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0374 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0374
Description:

Target: scaffold0374; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 1025 - 887
Alignment:
Q  20 agggggatcaaaaaccgggtaggggatacttttgtgaaacctatcagtcaactgtatatcaaattgtctgtcacccacaaaaaccaaggtaatccaggca 119  Q
    ||||||||||||||| |||||||||||||| || ||||||||||||||||   |||||||||||||||  |||||  |||||||||||||||||||||||    
T  1025 agggggatcaaaaactgggtaggggatactcttatgaaacctatcagtcagtcgtatatcaaattgtccctcaccatcaaaaaccaaggtaatccaggca 926  T
Q  120 ccaagatcgattccgtaaaagtcacgaatcgctttccat 158  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  925 ccaagaccgattctgtaaaagtcacgaatcgctttccat 887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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