View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14984_low_4 (Length: 490)
Name: NF14984_low_4
Description: NF14984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14984_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 26 - 280
Target Start/End: Complemental strand, 19116381 - 19116127
Alignment:
| Q |
26 |
tatgtaaatgttggttaaacatataatagacaactggggcagctgaccccacttccccaatggtgaatatgtccctgacagtaagatattgctaatttat |
125 |
Q |
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| T |
19116381 |
tatgtaaatgttggttaaacatataatagacaactggggaagctgaccccacttcccaaatggtgaatatgtccctgacagtaagatattgctaatttat |
19116282 |
T |
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| Q |
126 |
tgaactgttttgtactaatgtttctctcagtgtcccttcacactaattcaaactatgtatatgtaaaatagggtctatcttatcatttttggtgtcatgg |
225 |
Q |
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| T |
19116281 |
tgaactgttttgtactaatgtttctctcagtgtcccttcacacaaattcaaactatgtacatgtaaaacagggtctatcttatcatttttggtgtcatgg |
19116182 |
T |
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| Q |
226 |
cgaaccaataaaatggtgtacttgtaactatttaaaactagatataatctcgtgc |
280 |
Q |
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| T |
19116181 |
cgaaccaataaaatggtgtccttgtaactatttaaaactagatataatctcgtgc |
19116127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 300 - 474
Target Start/End: Complemental strand, 19113562 - 19113375
Alignment:
| Q |
300 |
gatattaatgtttgtgaccttaacagaacacctccaaagaccccgttagagtgggttagaaaaaaga-------------gagaaaaatggtaaattcat |
386 |
Q |
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| T |
19113562 |
gatattaatgtttgtgaccttaacagaacacctccaaagaccccgttagagtgggttagaaaaaagaagaaaagaaaagagagaaaaatggtaaattcat |
19113463 |
T |
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| Q |
387 |
gagaggcacatggtcattgattatatgtgaaaaagttcaatgacactacaacagcaaaaacattaactatcctcagagaccagctttc |
474 |
Q |
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| T |
19113462 |
gagaggcacatggtcattgattatatgtgaaaaagttcaatgacactacaacagcaaaaacattaactatcctcagagaccagctttc |
19113375 |
T |
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