View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14984_low_6 (Length: 432)
Name: NF14984_low_6
Description: NF14984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14984_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 16146296 - 16146717
Alignment:
| Q |
1 |
tacaggtagaaggtgaatgcacaaaaattgttggtagctgtgcaagacaagattgttctgaacactgtaattcctttgcaagaggcgttcgtgttttagg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16146296 |
tacaggtagaaggtgaatgcacaaaaattgttggtagctgtgcaagacaagattgttctgaacactgtaattcctttgcaagaggcgttcgtgttttagg |
16146395 |
T |
|
| Q |
101 |
atcgtcatgttcatactataacttatgcacttgtacttatgatcagccaccacctggattgacatcacctggtaactgtggtattgggatgggaatttgc |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16146396 |
atcgtcatgttcattctataacttatgcacttgtacttatgatcagccaccacctggattgacaccacctggtaactgtggtattgggatgggaatttgc |
16146495 |
T |
|
| Q |
201 |
actggtgactgtcaagatgattgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggtgttgggaagtgtgtcgatgcccttgatatgagtcttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16146496 |
actggtgactgtcaagatgattgttgcaacaaaaggtgtgttagtagatatagtaaaacgggtgttgggaagtgtgttgatgcccttgatatgagtcttt |
16146595 |
T |
|
| Q |
301 |
gcctttgttcctatgatcgttgagtttgatcttaaaggaaatagaataagtatgtatgatattcatagctatttcaaatgtattatcttcatgattttat |
400 |
Q |
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| T |
16146596 |
gcctttgttcctatgatcgttgagtttgatcttaaaggaaatacaataagtatgtatgatattcatagctatttcaaatgtattatcttcatgattttat |
16146695 |
T |
|
| Q |
401 |
tcaccaattaattgatagaata |
422 |
Q |
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||| |||||||||||||||||| |
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| T |
16146696 |
tcatcaattaattgatagaata |
16146717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 16176649 - 16177070
Alignment:
| Q |
1 |
tacaggtagaaggtgaatgcacaaaaattgttggtagctgtgcaagacaagattgttctgaacactgtaattcctttgcaagaggcgttcgtgttttagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| | |||||||| | || ||| | || | ||||| ||| ||| ||||||||| |
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| T |
16176649 |
tacaggtagaaggtgaatgcacaaaaattgttggtagttgtgcaaaagaagattgtgcaactcattgtcaatcatatgcaaaaggtgttgctgttttagg |
16176748 |
T |
|
| Q |
101 |
atcgtcatgttcatactataacttatgcacttgtacttatgatcagccaccacctggattgacatcacctggtaactgtggtattgggatgggaatttgc |
200 |
Q |
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||| |||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||| |||||||||| ||| ||||||||||||||||||| |
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| T |
16176749 |
atcatcatgttcatactacaacttatgcacttgtacttttgataagccaccaccaggattaacaccacctggtaattgtattattgggatgggaatttgc |
16176848 |
T |
|
| Q |
201 |
actggtgactgtcaagatgattgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggtgttgggaagtgtgtcgatgcccttgatatgagtcttt |
300 |
Q |
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| T |
16176849 |
aatggtgactgtcaagatgaatgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggttctgggaattgtgtcgatgcctttggtatgattcttt |
16176948 |
T |
|
| Q |
301 |
gcctttgttcctatgatcgttgagtttgatcttaaaggaaatagaataagtatgtatgatattcatagctatttcaaatgtattatcttcatgattttat |
400 |
Q |
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| T |
16176949 |
gtctttgttcctatgatcgttgaatttgatcttagaggaaatacaataaatttgtatgatattcatagctatttcaaatgcattctcttcatgattttat |
16177048 |
T |
|
| Q |
401 |
tcaccaattaattgatagaata |
422 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
16177049 |
tcaccaattaattgatagaata |
16177070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 16154928 - 16155349
Alignment:
| Q |
1 |
tacaggtagaaggtgaatgcacaaaaattgttggtagctgtgcaagacaagattgttctgaacactgtaattcctttgcaagaggcgttcgtgttttagg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||| | ||||||| | || ||| | | | || || ||| ||| ||||||||| |
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| T |
16154928 |
tacaggtagaaggtgaatgcacaataattgttggtagttgtgcaaaaatagattgtgcaactcattgtcaagcatatggaaaaggtgttgctgttttagg |
16155027 |
T |
|
| Q |
101 |
atcgtcatgttcatactataacttatgcacttgtacttatgatcagccaccacctggattgacatcacc---tggtaactgtggtattgggatgggaatt |
197 |
Q |
| |
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||| |||||||||| ||| |||||||||||||||| |||||||||||||||||| | ||| ||||||| |||| | |||| |||||||||||||||| |
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| T |
16155028 |
atcctcatgttcattctacaacttatgcacttgtagttatgatcagccaccaccagcattatcatcaccaactggtcattgtgatattgggatgggaatt |
16155127 |
T |
|
| Q |
198 |
tgcactggtgactgtcaagatgattgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggtgttgggaagtgtgtcgatgcccttgatatgagtc |
297 |
Q |
| |
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||||||| |||||||| | ||||||||||||||||| |||||||||| ||||||||||||| |||| |||| ||||| ||||| || ||||| | |
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| T |
16155128 |
tgcactgatgactgtctaagtgattgttgcaacaaaaagtgtgttagtagatatagtaaaacaggtgctggggtctgtgttaatgcctttcatatgcttt |
16155227 |
T |
|
| Q |
298 |
tttgcctttgttcctatgatcgttgagtttgatcttaaaggaaatagaataagtatgtatg--atattcatagctatttcaaatgtattatcttcatgat |
395 |
Q |
| |
|
||||| ||||| |||| ||||||||||||||||||||||||||| |||||| || |||| |||||| |||| |||||||||||||| ||||| |||| |
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| T |
16155228 |
tttgcatttgtaactatcttcgttgagtttgatcttaaaggaaatacaataagcatatatgatatattcctagcgatttcaaatgtattctcttcgtgat |
16155327 |
T |
|
| Q |
396 |
tttattcaccaattaattgata |
417 |
Q |
| |
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|||||||| ||||||||||||| |
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| T |
16155328 |
tttattcatcaattaattgata |
16155349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 16200350 - 16200399
Alignment:
| Q |
89 |
tcgtgttttaggatcgtcatgttcatactataacttatgcacttgtactt |
138 |
Q |
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|||||||||||||||||||||| || || ||||||||||||||||||| |
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| T |
16200350 |
tcgtgttttaggatcgtcatgtgcaatttacaacttatgcacttgtactt |
16200399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 16271179 - 16271231
Alignment:
| Q |
92 |
tgttttaggatcgtcatgttcatactataacttatgcacttgtacttatgatc |
144 |
Q |
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|||||||||||| |||||||||| ||| ||||||||||| ||| ||| ||||| |
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| T |
16271179 |
tgttttaggatcttcatgttcattctacaacttatgcacctgtgcttttgatc |
16271231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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