View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14984_low_7 (Length: 429)
Name: NF14984_low_7
Description: NF14984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14984_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Original strand, 52843591 - 52843991
Alignment:
| Q |
19 |
atcgccgattatcctttttaagtgataccgttgc-----tttgctttgtgagagatattattttgagtaatgtgaaaaataagaaaacgaaacgttgaag |
113 |
Q |
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| T |
52843591 |
atcgccgattatcctttttaagtgataccgttgctttgctttgctttgtgagagagattattttgagtaatgtgaaaaataagataacgaaacgttgaag |
52843690 |
T |
|
| Q |
114 |
aaacgaaatggataaaagaggtggtgttgttgctgcaatggttacgagattggtgttctaattgtgattcgtgaagatgagcgaggagcaaggaggaaac |
213 |
Q |
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| T |
52843691 |
aaacgaaatggataaaagaggtggtgttgttgctgcaatggttacgaaattggtgttctaattgtgattcgtgaagatgagcgaggagcaaggaggaaac |
52843790 |
T |
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| Q |
214 |
aatgttccttattcaaatggcaaagaagagagaatttatgttgcaattagagtaaggcctttgaatgnnnnnnnnnnnncgaggcaggatgtttcagaat |
313 |
Q |
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| T |
52843791 |
aatgttccttattcaaatggcaaagaagagagaatctatgttgcaattagagtaaggcctttgaatgaaaaagaaaaaacgaggcaggatgtttcagaat |
52843890 |
T |
|
| Q |
314 |
gggaatgtgtttctcatagcacgatcaaattcaagaacaatggtcatgcagaacagcgatcatcgccggatacatatacatttggtagtaaacatgttca |
413 |
Q |
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| T |
52843891 |
gggaatgtgtttctcatagcacgatcaaattcaagaacaatggtcatgcagaacagcgatcatcgccggatacatatacatttggtagtaaacatgttca |
52843990 |
T |
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| Q |
414 |
t |
414 |
Q |
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| T |
52843991 |
t |
52843991 |
T |
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