View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14986_high_15 (Length: 382)
Name: NF14986_high_15
Description: NF14986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14986_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 9 - 366
Target Start/End: Complemental strand, 52998700 - 52998343
Alignment:
| Q |
9 |
gagaagaacaaagaacaagacgcggttgcattagctacatgatgagattgtatatatttgggattaatattgaccttagaacatgggaattgaatgaaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52998700 |
gagaagaacaaagaacaagacgcggttgcattaggtacatgatgagattgtatatatttgggattaatattgaccttagaacatgggaattgaatgaaaa |
52998601 |
T |
|
| Q |
109 |
acaaaaatgtctaactagctagtagttaattctgcagatagaaataccaatcctccatatcaatatgattctctaccaattaatattttatcgaccaaaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52998600 |
acaaaaatgtctaactagctagtagttaattctgcagatagaaataccaatcctccatatcaatatgattctctaccaattaatattttatcgaccaaaa |
52998501 |
T |
|
| Q |
209 |
tttatatctgaatatgactatcattctgctatatctcta------tataatatattgtagatagaacgaggaccacattgtatgcagccaatcccttatc |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52998500 |
tttatatctgaatatgactatcattctgctatatctctatatatatataatatattgcagatagaacgaggaccacattgtatgcagccaatcccttatc |
52998401 |
T |
|
| Q |
303 |
tcttataatatgcattctaaatgtgggatatatatgaggagtagtactgcatgtgcatatattc |
366 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
52998400 |
tcttataatatgcattctaaatgtggg------atgaggagtagtactgcatgtgcatatattc |
52998343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University