View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14986_high_25 (Length: 256)
Name: NF14986_high_25
Description: NF14986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14986_high_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 28143702 - 28143778
Alignment:
| Q |
75 |
tggattcggaatgggaaactcttcatacaatcttaaccaaatcactcaccatcctttcctggtataccaacacttct |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28143702 |
tggattcggaatgggaaactcttcatacaatcttaaccaaatcactcaccatcctttcctggtataccaacacttct |
28143778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 28143643 - 28143677
Alignment:
| Q |
11 |
gagtgagaagaaaagaataagaacttagattgaag |
45 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
28143643 |
gagtgaaaagaaaagaataagaacttagattgaag |
28143677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University