View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14986_high_31 (Length: 201)
Name: NF14986_high_31
Description: NF14986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14986_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 9164962 - 9164790
Alignment:
| Q |
14 |
gatgaagaggataatgatgatgacgatgtatgggttttattcttcctttcacttttaacttctccctt-cctttccttttacttaatgtcgatttactac |
112 |
Q |
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| T |
9164962 |
gatgaagaggatgctgatgatgacgatgtatgggttttattcttcctttcacttttaacttctccctttcctttccttttacttaatgtcgatttactac |
9164863 |
T |
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| Q |
113 |
aattgtttattgttcttctttccacttataagatgaaagataagcatagcttagtgcaaactacactcccttt |
185 |
Q |
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| T |
9164862 |
aattgtttattgttcttcgttccacttataagatgaaagatgagcatagcttagtgcaaactacactcccttt |
9164790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 9152118 - 9151967
Alignment:
| Q |
29 |
gatgatgacgatgtatgggttttattcttcctttcacttttaacttctcccttcctttccttttacttaatgtcgatttactacaattgtttattgttct |
128 |
Q |
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| T |
9152118 |
gatgacgacgatgtatgggttttattccttctttctcttttcacttctccctt----tccttttacttactttctatttactataatt-tttgttgttct |
9152024 |
T |
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| Q |
129 |
tctttccacttataagatgaaagataagcatagcttagtgcaaactacactcccttt |
185 |
Q |
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| T |
9152023 |
ttgttccacttataagatgaaagataagcatagctcagtgcaaattatactcccttt |
9151967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 179
Target Start/End: Original strand, 9179523 - 9179671
Alignment:
| Q |
27 |
atgatgatgacgatgtatgggttttattcttcctttcacttttaacttctcccttcctttccttttacttaatgtcgatttactacaattgtttattgtt |
126 |
Q |
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| T |
9179523 |
atgacgatgacgacgtatgagttttattccttctttctcttttcatttctccctttcttt----ttacttactttcgatttactacaatattttgttgtt |
9179618 |
T |
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| Q |
127 |
cttctttccacttataagatgaaagataagcatagcttagtgcaaactacact |
179 |
Q |
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| T |
9179619 |
ctttgttccactaataaaatgaacgataagcatagctcaatgcaaattacact |
9179671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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