View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14986_high_9 (Length: 412)
Name: NF14986_high_9
Description: NF14986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14986_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 407
Target Start/End: Complemental strand, 30579833 - 30579440
Alignment:
| Q |
16 |
atttcttctggtagtttcatgttattatttactatacaattcaaacaatgcaaatgatagaaaatagttattattttatcttttccttgtttggttggtt |
115 |
Q |
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| T |
30579833 |
atttcttctgatagtttcatgttattatttactatacaattcaaacaatgcaaatgatagaaaatagttattattttatcttttccttgtttggttggtt |
30579734 |
T |
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| Q |
116 |
gggtaga--aaatgggagaagggaaattttgctaattagaggaatgtacnnnnnnnnnctcatgtcgtgatggaggggtgaaatatgaagagggggaaat |
213 |
Q |
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| T |
30579733 |
gggtagagaaaacgggagaagggaaattttgctaattagaggaatgcactttttttttctcatgtcgtgatggaggggtgaaatatgaagggggggaaat |
30579634 |
T |
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| Q |
214 |
aatgtgaggctcaaattgaagttttccctctcaagtgaagagacaatgaaaaaactttagaagacaatttcactttttccatttttcacccatctattta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30579633 |
aatgtgaggctcaaattgaagttttccctctcaagtgaagagacaatgaaaaaactttagaagacaatttcactttttccattttttacccatctattta |
30579534 |
T |
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| Q |
314 |
cctctctcatctagcttgcgatccttttgattcttatttatcaaggttgaaaaagatactgcctcaattattattcattttctttcttctcact |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30579533 |
cctctctcatctagcttgcgatccttttgattcttatttatcaaggttgaaaaagatactgcctcaattattattcattttctttcttttcact |
30579440 |
T |
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