View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14986_low_14 (Length: 385)
Name: NF14986_low_14
Description: NF14986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14986_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 115 - 377
Target Start/End: Complemental strand, 12186784 - 12186521
Alignment:
| Q |
115 |
taatgtagtaatgtacgagactgtaattgacagtttttt-catatggcttttatggtcaaatcatattgtcacaactcttgatctttgcgctgaaattat |
213 |
Q |
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| T |
12186784 |
taatgtagtaatgtacgagactgtcattgacggtttttttcatatggcttttatggccaaatcatattgtcacaactcttgatctttacgccgaaattat |
12186685 |
T |
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| Q |
214 |
atcctcttgacaccttccaaactgttacatatacttgtatatcattcagggttactgtgcttcccatcagcccaaggaagccattcgttttctaatgaac |
313 |
Q |
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| T |
12186684 |
atcctcttgacaccttccaaactattacatatacttgtatatcattcatggttactttgcttcccatcagcccaaggaagccattcgttttctaatgaac |
12186585 |
T |
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| Q |
314 |
cttctatttgttgaacaattccacctagatattacttcgttcgaatcggtaattaattcctttg |
377 |
Q |
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| T |
12186584 |
cttctatttgttgaacaattccacctagatattacttcgttcgaatctgtaattaattcctttg |
12186521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 12186878 - 12186808
Alignment:
| Q |
7 |
aatgatattacattcggcacattaattcactatctgtgactgtatggtttagctggtgttcttaaggctag |
77 |
Q |
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| T |
12186878 |
aatgatattacattcggcacattaattcactatctgtgactgtatggtttagctggtgttcttaaggctag |
12186808 |
T |
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