View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14986_low_17 (Length: 358)
Name: NF14986_low_17
Description: NF14986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14986_low_17 |
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| [»] scaffold0286 (1 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 348
Target Start/End: Complemental strand, 3627 - 3296
Alignment:
| Q |
17 |
acatattatataataatgtatatgataaaattataattgttccggattgagccaaggtcatctaaaattgggtgtctacaatgtaaatccaactccacat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3627 |
acatattatataataatgtatatgataaaattataattgttccggattgagccaaggtcatctaaaattgggtgtctacaatgtaaatctaactccacat |
3528 |
T |
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| Q |
117 |
gcagagcttctgagaagctagcttcggaaaagttagcttttgagaagctgtgcattcaatcatgtgatcaatcagacaataatccgcaaatcatgacaaa |
216 |
Q |
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| T |
3527 |
gcagagcttctgagaagctagcttcggaaaagttagcttttgagaagctgtgcatacaatcatgtgatcaatcacacaataatccgcaaatcatgacaaa |
3428 |
T |
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| Q |
217 |
ctagtgttgcaaaggtttttccgttgatctcatcctcataagcaatgtatgcatttacatttacctcattttccaaatcaaatcactcactaacttcggc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3427 |
ctagtgttgcaaaggtttttccgttgatctcatcctcataagcaatgtatgcatttacatttaccttattttccaaatcaaatcactcactaacttcggc |
3328 |
T |
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| Q |
317 |
ttcagagtgcttgcagatacactatccctatg |
348 |
Q |
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| T |
3327 |
ttcagagtgcttgcagatacactatccctatg |
3296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 348
Target Start/End: Complemental strand, 2211525 - 2211194
Alignment:
| Q |
17 |
acatattatataataatgtatatgataaaattataattgttccggattgagccaaggtcatctaaaattgggtgtctacaatgtaaatccaactccacat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2211525 |
acatattatataataatgtatatgataaaattataattgttccggattgagccaaggtcatctaaaattgggtgtctacaatgtaaatctaactccacat |
2211426 |
T |
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| Q |
117 |
gcagagcttctgagaagctagcttcggaaaagttagcttttgagaagctgtgcattcaatcatgtgatcaatcagacaataatccgcaaatcatgacaaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2211425 |
gcagagcttctgagaagctagcttcggaaaagttagcttttgagaagctgtgcatacaatcatgtgatcaatcacacaataatccgcaaatcatgacaaa |
2211326 |
T |
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| Q |
217 |
ctagtgttgcaaaggtttttccgttgatctcatcctcataagcaatgtatgcatttacatttacctcattttccaaatcaaatcactcactaacttcggc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2211325 |
ctagtgttgcaaaggtttttccgttgatctcatcctcataagcaatgtatgcatttacatttaccttattttccaaatcaaatcactcactaacttcggc |
2211226 |
T |
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| Q |
317 |
ttcagagtgcttgcagatacactatccctatg |
348 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2211225 |
ttcagagtgcttgcagatacactatccctatg |
2211194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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