View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14986_low_23 (Length: 303)
Name: NF14986_low_23
Description: NF14986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14986_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 158 - 291
Target Start/End: Original strand, 34013307 - 34013440
Alignment:
| Q |
158 |
ggaggggtaccccagtattgggaccactgcctttctcaccagtacatagagctctgaaattttcagcagttttgggaacaacatcgttgtaaagttcgac |
257 |
Q |
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| T |
34013307 |
ggaggggtaccccagtattgggaccactgcctttctcaccagtacatagagctctgaaattttcagcagttttgggaacaacatcgttgtaaagttcgac |
34013406 |
T |
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| Q |
258 |
caatattcgtccttctagttcttcacctatgcta |
291 |
Q |
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| T |
34013407 |
caatattcgtccttctagttcttcacctatgcta |
34013440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 34013162 - 34013213
Alignment:
| Q |
17 |
acaaagtacagatctttacaatcaacaacaattctgagaatcaaaacagaac |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34013162 |
acaaagtacagatctttacaatcaacaacaattctgagaatcaaaacagaac |
34013213 |
T |
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