View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14986_low_27 (Length: 270)

Name: NF14986_low_27
Description: NF14986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14986_low_27
NF14986_low_27
[»] chr7 (5 HSPs)
chr7 (16-234)||(11697932-11698150)
chr7 (144-234)||(11697409-11697499)
chr7 (140-234)||(47362672-47362768)
chr7 (165-234)||(47362108-47362177)
chr7 (165-234)||(47361149-47361218)
[»] chr4 (9 HSPs)
chr4 (120-231)||(3803141-3803253)
chr4 (140-231)||(48339685-48339776)
chr4 (139-234)||(44348763-44348862)
chr4 (144-230)||(35317686-35317772)
chr4 (163-233)||(35318285-35318355)
chr4 (142-233)||(35657488-35657582)
chr4 (154-234)||(35658072-35658152)
chr4 (160-216)||(48339613-48339669)
chr4 (146-200)||(30610184-30610238)
[»] chr3 (4 HSPs)
chr3 (140-226)||(7725563-7725649)
chr3 (144-230)||(7724037-7724123)
chr3 (35-96)||(29255682-29255743)
chr3 (120-213)||(29255746-29255840)
[»] chr6 (1 HSPs)
chr6 (140-232)||(1825434-1825524)
[»] chr2 (5 HSPs)
chr2 (141-233)||(22899896-22899988)
chr2 (140-198)||(17369467-17369525)
chr2 (140-190)||(22899419-22899469)
chr2 (145-188)||(3130041-3130084)
chr2 (161-227)||(17369889-17369955)
[»] scaffold0983 (1 HSPs)
scaffold0983 (142-233)||(1852-1943)
[»] chr5 (1 HSPs)
chr5 (144-233)||(39999014-39999101)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 11697932 - 11698150
Alignment:
Q  16 atgaagaaatgttataatgaatgaatcgaaagagataagagagtaagcagaatttgatttgttttagggcagagaagaagaaagaagaatcaatgcgaga 115  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11697932 atgaagaaatgttataatgaatgaatcgaaagagataagggagtaagcagaatttgatttgttttagggcagagaagaagaaagaagaatcaatgtgaga 11698031  T
Q  116 gacagtagcaaaaatctagattgtgggagaagaaaatgaaaagggaaatgagtttatgagaattgatgtaataagttgaggtacataggtgactttttaa 215  Q
    |||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11698032 gacagtagcaaaaatccagattgagggagaagaaaatgaaaatggaaatgagtttatgagaattgatgtaataagttgaggtacataggtgattttttaa 11698131  T
Q  216 tctcaatcatttatttttg 234  Q
    |||||| ||||||||||||    
T  11698132 tctcaaccatttatttttg 11698150  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 234
Target Start/End: Complemental strand, 11697499 - 11697409
Alignment:
Q  144 gaagaaaatgaaaagggaaatgagtttatgagaattgatgtaataagttgaggtacataggtgactttttaatctcaatcatttatttttg 234  Q
    |||||| ||||||||||||||||| ||||||||||||||| ||  ||||||||||||||  | ||||||||||||||| ||||||||||||    
T  11697499 gaagaagatgaaaagggaaatgagcttatgagaattgatgcaacgagttgaggtacatatataactttttaatctcaaccatttatttttg 11697409  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 47362672 - 47362768
Alignment:
Q  140 gggagaagaaaatgaaaagggaaatgagtttatgagaattgatgtaataa---gttgaggtacataggtgactttttaatctcaatcatttatttttg 234  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||   | |||  || ||| |||| ||||||||||||||||||||||||||    
T  47362672 gggagaagaagatgaaaagggaaatgagtttatgagaattgatgtaataataaggtgaa-tatatatgtgaatttttaatctcaatcatttatttttg 47362768  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 47362177 - 47362108
Alignment:
Q  165 gagtttatgagaattgatgtaataagttgaggtacataggtgactttttaatctcaatcatttatttttg 234  Q
    |||||||||||||||||||||||||| | ||||| | | ||||||||| |||||||| ||| ||||||||    
T  47362177 gagtttatgagaattgatgtaataaggttaggtatacatgtgacttttcaatctcaaccatctatttttg 47362108  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 47361149 - 47361218
Alignment:
Q  165 gagtttatgagaattgatgtaataagttgaggtacataggtgactttttaatctcaatcatttatttttg 234  Q
    ||||||||||||||||||| |||||| | ||||| | | ||||||||| |||||||| ||| ||||||||    
T  47361149 gagtttatgagaattgatgcaataaggttaggtatacatgtgacttttcaatctcaaccatctatttttg 47361218  T

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Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 120 - 231
Target Start/End: Complemental strand, 3803253 - 3803141
Alignment:
Q  120 gtagcaaaaatctagattgtggg-agaagaaaatgaaaagggaaatgagtttatgagaattgatgtaataagttgaggtacataggtgactttttaatct 218  Q
    |||||| |||||| ||||||||| ||||| | |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  3803253 gtagcacaaatcttgattgtggggagaagtagatgaaaagggaaatgagtttatgagaattgatataataaggtgaggtacatatgtgactttttaatct 3803154  T
Q  219 caatcatttattt 231  Q
    ||  |||||||||    
T  3803153 catccatttattt 3803141  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 48339685 - 48339776
Alignment:
Q  140 gggagaagaaaatgaaaagggaaatgagtttatgagaattgatgtaataagttgaggtacataggtgactttttaatctcaatcatttattt 231  Q
    |||| ||||| ||||||||||||||||||||||||| | |||| ||||||  || |||| ||| |||||||||||||||||| ||| |||||    
T  48339685 gggaaaagaagatgaaaagggaaatgagtttatgaggactgatataataaagtgtggtatatatgtgactttttaatctcaaccatctattt 48339776  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 44348763 - 44348862
Alignment:
Q  139 tgggagaagaaaatgaaaagggaaatgagtttatgagaattgatg----taataagttgaggtacataggtgactttttaatctcaatcatttatttttg 234  Q
    |||||| |||| | ||||||||||| ||||||||||||||||||     ||||||| ||||||||||| |||||||||||||||||| |||  |||||||    
T  44348763 tgggaggagaagaagaaaagggaaacgagtttatgagaattgattgatataataaggtgaggtacatatgtgactttttaatctcaaccatcaatttttg 44348862  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 35317772 - 35317686
Alignment:
Q  144 gaagaaaatgaaaagggaaatgagtttatgagaattgatgtaataagttgaggtacataggtgactttttaatctcaatcatttatt 230  Q
    |||||| |||||||||||||||| || |||| ||||||| ||||||  |||||||| |  ||||||||||||||||||  |||||||    
T  35317772 gaagaagatgaaaagggaaatgaattcatgaaaattgatataataaagtgaggtacgtttgtgactttttaatctcaactatttatt 35317686  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 35318285 - 35318355
Alignment:
Q  163 atgagtttatgagaattgatgtaataagttgaggtacataggtgactttttaatctcaatcatttattttt 233  Q
    |||| |||||||||||| || ||||||  |||||| |||| |||||||||||||||||| |||||||||||    
T  35318285 atgaatttatgagaatttatataataaagtgaggtgcatatgtgactttttaatctcaaccatttattttt 35318355  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 35657582 - 35657488
Alignment:
Q  142 gagaagaaaatgaaaagggaaatgagtttatgagaa---ttgatgtaataagttgaggtacataggtgactttttaatctcaatcatttattttt 233  Q
    |||||||| |||||||||||||||| ||||| ||||   ||||| ||||||| | ||  ||||| ||| |||||||||||||| |||||||||||    
T  35657582 gagaagaagatgaaaagggaaatgaatttataagaagaattgatataataaggtaagcaacatatgtgcctttttaatctcaaccatttattttt 35657488  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 35658072 - 35658152
Alignment:
Q  154 aaaagggaaatgagtttatgagaattgatgtaataagttgaggtacataggtgactttttaatctcaatcatttatttttg 234  Q
    ||||||||||||| ||||| | ||||||| ||||||| | ||| ||||| ||| |||||||||||||  ||||||||||||    
T  35658072 aaaagggaaatgaatttataaaaattgatataataaggtaaggaacatatgtgcctttttaatctcagccatttatttttg 35658152  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 48339669 - 48339613
Alignment:
Q  160 gaaatgagtttatgagaattgatgtaataagttgaggtacataggtgactttttaat 216  Q
    |||||||||||||||||||||||  |||||| ||||||||||| |||||||| ||||    
T  48339669 gaaatgagtttatgagaattgataaaataagatgaggtacatatgtgactttgtaat 48339613  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 30610184 - 30610238
Alignment:
Q  146 agaaaatgaaaagggaaatgagtttatgagaattgatgtaataagttgaggtaca 200  Q
    |||| ||||||| |||||||||||||||| ||||||| ||||||| |||||||||    
T  30610184 agaagatgaaaaaggaaatgagtttatgataattgatataataaggtgaggtaca 30610238  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 7725563 - 7725649
Alignment:
Q  140 gggagaagaaaatgaaaagggaaatgagtttatgagaattgatgtaataagttgaggtacataggtgactttttaatctcaatcatt 226  Q
    |||||||||| |||||||||||||||| ||||||||||||||| ||||||  |||||| |||| |||||||||||||||||| ||||    
T  7725563 gggagaagaagatgaaaagggaaatgaatttatgagaattgatataataaagtgaggtgcatatgtgactttttaatctcaaccatt 7725649  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 7724123 - 7724037
Alignment:
Q  144 gaagaaaatgaaaagggaaatgagtttatgagaattgatgtaataagttgaggtacataggtgactttttaatctcaatcatttatt 230  Q
    |||||| |||||||||||||||| |||||||||||| || ||||||  ||| ||||||| |||||||||||||||||| ||||||||    
T  7724123 gaagaagatgaaaagggaaatgaatttatgagaatttatataataaagtgaagtacatatgtgactttttaatctcaaccatttatt 7724037  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 29255682 - 29255743
Alignment:
Q  35 aatgaatcgaaagagataagagagtaagcagaatttgatttgttttagggcagagaagaaga 96  Q
    ||||||||||| || | || |||||||||| |||||||||||||||||||| ||||||||||    
T  29255682 aatgaatcgaatgaaagaatagagtaagcataatttgatttgttttagggcggagaagaaga 29255743  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 29255746 - 29255840
Alignment:
Q  120 gtagcaaaaatctagattgtggga-gaagaaaatgaaaagggaaatgagtttatgagaattgatgtaataagttgaggtacataggtgacttttt 213  Q
    |||||| |||| | |||||||||| |||||| ||||||| | ||||||||||||| ||||| || |||||||  |||||| ||| ||||||||||    
T  29255746 gtagcagaaattttgattgtgggaagaagaacatgaaaaagtaaatgagtttatgtgaatttatataataaggagaggtatatatgtgacttttt 29255840  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 1825434 - 1825524
Alignment:
Q  140 gggagaagaaaatgaaaagggaaatgagtttatgagaattgatgtaataagttgaggtacataggtgactttttaatctcaatcatttatttt 232  Q
    |||||||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||  ||| ||||||||||||| |||| ||||||||||    
T  1825434 gggagaagaagatgaaaaaggaaatgagtttatgagaattgatctaataaggtgaggt--atatgtgactttttaatgtcaaccatttatttt 1825524  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 22899896 - 22899988
Alignment:
Q  141 ggagaagaaaatgaaaagggaaatgagtttatgagaattgatgtaataagttgaggtacataggtgactttttaatctcaatcatttattttt 233  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||| | | ||| |||  |||| |||||||||||| |||||||||||    
T  22899896 ggagaagaagatgaaaaggaaaatgagtttatgagaattgatgtaataaggttaagtatatatttgacattttaatctcaaccatttattttt 22899988  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 17369525 - 17369467
Alignment:
Q  140 gggagaagaaaatgaaaagggaaatgagtttatgagaattgatgtaataagttgaggta 198  Q
    |||||||||| ||||||| ||||||||||||||||||| |||||| ||||| |||||||    
T  17369525 gggagaagaagatgaaaaaggaaatgagtttatgagaaatgatgtgataagatgaggta 17369467  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 22899469 - 22899419
Alignment:
Q  140 gggagaagaaaatgaaaagggaaatgagtttatgagaattgatgtaataag 190  Q
    |||||||||| |||||||   ||||||||||||||||||||||||||||||    
T  22899469 gggagaagaagatgaaaactaaaatgagtttatgagaattgatgtaataag 22899419  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 3130041 - 3130084
Alignment:
Q  145 aagaaaatgaaaagggaaatgagtttatgagaattgatgtaata 188  Q
    ||||| |||||||||||||||||||||| ||||||||| |||||    
T  3130041 aagaagatgaaaagggaaatgagtttattagaattgatataata 3130084  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 17369889 - 17369955
Alignment:
Q  161 aaatgagtttatgagaattgatgtaataagttgaggtacataggtgactttttaatctcaatcattt 227  Q
    |||||||||||| ||||||||| ||| ||  ||| ||||||| ||||||||||||| |||| |||||    
T  17369889 aaatgagtttataagaattgatctaacaatgtgaagtacatatgtgactttttaatttcaaccattt 17369955  T

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Target: scaffold0983 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 142 - 233
Target Start/End: Original strand, 1852 - 1943
Alignment:
Q  142 gagaagaaaatgaaaagggaaatgagtttatgagaattgatgtaataagttgaggtacataggtgactttttaatctcaatcatttattttt 233  Q
    |||||||| || |||| |||||||||||||||||||||||| ||||||| |||||| |||| |||  ||||||||||||| |||||||||||    
T  1852 gagaagaagataaaaaaggaaatgagtttatgagaattgatataataaggtgaggtgcatatgtgtgtttttaatctcaaccatttattttt 1943  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 39999014 - 39999101
Alignment:
Q  144 gaagaaaatgaaaagggaaatgagtttatgagaattgatgtaataagttgaggtacataggtgactttttaatctcaatcatttattttt 233  Q
    |||||| |||||||||||||||| ||||||||  ||||| ||||||| ||  ||||||| ||| |||||||||||||| |||||||||||    
T  39999014 gaagaagatgaaaagggaaatgactttatgag--ttgatataataaggtgttgtacatatgtgcctttttaatctcaaccatttattttt 39999101  T

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