View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14986_low_3 (Length: 452)
Name: NF14986_low_3
Description: NF14986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14986_low_3 |
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| [»] scaffold0089 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 52982188 - 52982531
Alignment:
| Q |
18 |
acatattggggacccctactaaatctagaatgaagatggatcacatacacacagatatgttgagatatagaatagaagaaagtgacattaatatgttaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52982188 |
acatattggggacccctactaaatctagaatgaagatggatcacatacacacagatatgttgagatatagaatagaagaaagtgacattaatatgttaaa |
52982287 |
T |
|
| Q |
118 |
tttgggatgaaaatagttatactgtttgttcgatgcaaacaatgaaggtatgacggtgtgatcgtattcatctacttgtggtcctctacatttatcgtat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52982288 |
tttgggatgaaaatagttatactgtttgttcgatgcaaacaatgaaggtatgacggtgtgatcgtattcatctacttgtggtcctctacatttatcgtat |
52982387 |
T |
|
| Q |
218 |
agtttccgtgcttcaattcggtaccttctgatttcagataatgacactgaaacacgcatgcatatctatctcaaattaacgcaactctctttgcaaagtt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52982388 |
agtttccgtgcttcaattcggtaccttctgatttcagataatgacactgaaacccgcatgcatatctatctcaaattaacgcaactctctttgcaaagtt |
52982487 |
T |
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| Q |
318 |
aacgac-ttatcaacaagccattcgatgactagtattttctctc |
360 |
Q |
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| T |
52982488 |
aatgactttatcaacaagccattcgatgactagtattttctctc |
52982531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 360 - 442
Target Start/End: Original strand, 52982636 - 52982718
Alignment:
| Q |
360 |
cttgttcatcgacaatgtattgatgttaactgaacaaataaactgctagttatagcaaagttcccttcatcataagtttcttt |
442 |
Q |
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| T |
52982636 |
cttgttcattgacaatgtattgatgttaactgaacaaataaactgctagttatagcaaagttcccttcatcataagtttcttt |
52982718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 13369697 - 13369660
Alignment:
| Q |
18 |
acatattggggacccctactaaatctagaatgaagatg |
55 |
Q |
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| T |
13369697 |
acatattggggagccctactaaatctagaatgaagatg |
13369660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 17315072 - 17314985
Alignment:
| Q |
70 |
agatatgttgagatatagaatagaagaaagtgacattaatatgttaaatttgggatgaaaatagttatactgtttgttcgatgcaaacaa |
159 |
Q |
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| T |
17315072 |
agatatgttgagatataaaatagaagaaagtgacattaatatgttatgtttgagatggagataattata--tattgttcgatgcaaacaa |
17314985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 17294398 - 17294447
Alignment:
| Q |
88 |
aatagaagaaagtgacattaatatgttaaatttgggatgaaaatagttat |
137 |
Q |
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| T |
17294398 |
aatagaagaaagtgacattaatatgttatgtttgggatgaaaatagttat |
17294447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 438
Target Start/End: Complemental strand, 17314867 - 17314804
Alignment:
| Q |
370 |
gacaatgtattgatgttaactgaacaaataaactgctagttatagcaaagttcccttcatcataagttt |
438 |
Q |
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| T |
17314867 |
gacaatgaattgatgttaactggacaaataaactgctagtt-----aaagttccgttcatcataagttt |
17314804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 17940357 - 17940319
Alignment:
| Q |
18 |
acatattggggacccctactaaatctagaatgaagatgg |
56 |
Q |
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| T |
17940357 |
acatattggggagccctactaaatctagaatgaagatgg |
17940319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 20031164 - 20031201
Alignment:
| Q |
18 |
acatattggggacccctactaaatctagaatgaagatg |
55 |
Q |
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| T |
20031164 |
acatattggggagccctactaaatctagaatgaagatg |
20031201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 32667282 - 32667317
Alignment:
| Q |
19 |
catattggggacccctactaaatctagaatgaagat |
54 |
Q |
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| T |
32667282 |
catattggggagccctactaaatctagaatgaagat |
32667317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0089 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0089
Description:
Target: scaffold0089; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 36433 - 36470
Alignment:
| Q |
18 |
acatattggggacccctactaaatctagaatgaagatg |
55 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |
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| T |
36433 |
acatattggggagccctactaaatctagaatgaagatg |
36470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 20515449 - 20515486
Alignment:
| Q |
18 |
acatattggggacccctactaaatctagaatgaagatg |
55 |
Q |
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|||||||||||| ||||||||||||||||||||||||| |
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| T |
20515449 |
acatattggggagccctactaaatctagaatgaagatg |
20515486 |
T |
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