View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14986_low_31 (Length: 236)
Name: NF14986_low_31
Description: NF14986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14986_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 45535927 - 45536147
Alignment:
| Q |
1 |
aattaaaacacttgggaacttacctaaaccatttgttggtttggtttctgaattacggatgtaggtcgaaatttttaatgatacactattattagaatag |
100 |
Q |
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| T |
45535927 |
aattaaaacacttgggaacttatctaaaccatttgttggtttggtttctgaattacggatgtaggtcgaaatttttaatgatacactattattagaatag |
45536026 |
T |
|
| Q |
101 |
aaaaagggaggaaatccaagaagatatgctcaacaaaagatagggagagatacagttagtgcttgcggattgtttgatttaggtttcaatggctatccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
45536027 |
aaaaagggaggaaatccaagaagatatgctcaacaaaatatagggagagatacagttagtgctcgcggattgttggatttaggtttcaatggctatccac |
45536126 |
T |
|
| Q |
201 |
atacacttggtcagatggtag |
221 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
45536127 |
atacacttggtcaaatggtag |
45536147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 204
Target Start/End: Complemental strand, 44337767 - 44337568
Alignment:
| Q |
3 |
ttaaaacacttgggaacttacctaaaccatttgttggtttggttt-ctgaattacggatgtaggtcgaaatttttaatgatacactattattagaataga |
101 |
Q |
| |
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| T |
44337767 |
ttaaaacacttgggaacttatctaaaccatt-gttagtttggttttctgaattacaaatatatttcaaaaaatttaatgatacactattattagaacag- |
44337670 |
T |
|
| Q |
102 |
aaaagggaggaaatccaagaagatatgctcaacaaaagatagggagagatacagttagtgcttgcggattgtttgatttaggtttcaatggctatccaca |
201 |
Q |
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| T |
44337669 |
aaaagtgagggaatccaagaaactatgttcaactgaagatagaaagagatataattagt-attgcatattgttggatttaggtttcacgggctatccata |
44337571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 19190202 - 19190388
Alignment:
| Q |
33 |
ttgttggtttggtttctgaattacggatgtaggtcgaaatttttaatgatacactattattagaatagaaaaagggaggaaatccaagaagatatgctca |
132 |
Q |
| |
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|||||||||| |||||||||||| | ||||| |||||| |||||||||| ||||||||||||| |||||||| |||| ||||||||||| |||||||| |
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| T |
19190202 |
ttgttggtttagtttctgaattatgaatgtatttcgaaaattttaatgatgtactattattagaacagaaaaagtgagggaatccaagaagctatgctca |
19190301 |
T |
|
| Q |
133 |
acaaaagatagggagagatacagttagtgcttgcggattgtttgatttaggtttcaatggctatccacatacacttggtcagatggtag |
221 |
Q |
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||| ||||||||||||||||||||||||| || | || |||||||||||||||||| | |||||| |||||||||||| | ||||||| |
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| T |
19190302 |
acagaagatagggagagatacagttagtgattacagactgtttgatttaggtttcactagctatc--catacacttggtaaaatggtag |
19190388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 9798732 - 9798590
Alignment:
| Q |
4 |
taaaacacttgggaacttacctaaaccatttgttggtttggtttctgaattacggatgtaggtcgaaatttttaatgatacactattattagaatagaaa |
103 |
Q |
| |
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||||||||||||||||||| |||||||||| |||| |||||||||| |||||||||||||| |||| |||||||||||||||||||||||||| ||| | |
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| T |
9798732 |
taaaacacttgggaacttatctaaaccatt-gttgatttggtttcttaattacggatgtagttcgagatttttaatgatacactattattagagcagaca |
9798634 |
T |
|
| Q |
104 |
aagggaggaaatccaagaagatatgctcaacaaaagatagggag |
147 |
Q |
| |
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|| ||||| |||||||||||||||||||||| ||||||| |||| |
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| T |
9798633 |
aatggagggaatccaagaagatatgctcaactaaagataaggag |
9798590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 24563827 - 24563687
Alignment:
| Q |
1 |
aattaaaacacttgggaacttacctaaaccatttgttggtttggtttctgaattacggatgtaggtcgaaatttttaatgatacactattattagaatag |
100 |
Q |
| |
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||||||| || ||| ||||||| |||||||||| ||||||||||||||| |||||||||||||| | || ||||||||||||||||||||| ||||| | |
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| T |
24563827 |
aattaaagcagttgcgaacttatctaaaccatt-gttggtttggtttcttaattacggatgtagtttgagatttttaatgatacactattaatagaacat |
24563729 |
T |
|
| Q |
101 |
aaaaagggaggaaatccaagaagatatgctcaacaaaagata |
142 |
Q |
| |
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||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
24563728 |
aaaaagggagggaatccaagaagatatgctcaactaaagata |
24563687 |
T |
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