View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14986_low_34 (Length: 213)
Name: NF14986_low_34
Description: NF14986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14986_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 27985285 - 27985467
Alignment:
| Q |
17 |
aggtttggtagaaaagtaaagtttcagaatgttggcttcagtatataaacaagtggcagtttttctaaatttgagttactttttagttaagattagaaat |
116 |
Q |
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| T |
27985285 |
aggtttggtagaaaagtaaagtttcagaatgttggcttcagtatataaacaagtggcagtttttctaaatttgagttactttttagttaagattagaaat |
27985384 |
T |
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| Q |
117 |
gaatttagctgggttaggttcctaacagaacctatcaatagaatatatgtttacgttgctacttaacagatttgagttcatctca |
201 |
Q |
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| T |
27985385 |
gaatttagctgggttaggttctgttaggaacctatcaatagaatatatttttacgttgcta--taacagatttgagttcaactca |
27985467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 28071815 - 28071997
Alignment:
| Q |
17 |
aggtttggtagaaaagtaaagtttcagaatgttggcttcagtatataaacaagtggcagtttttctaaatttgagttactttttagttaagattagaaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28071815 |
aggtttggtagaaaagtaaagtttcagaatgttggcttcagtatataaacaagtggcagtttttctaaatttgagttactttttagttaagattagaaat |
28071914 |
T |
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| Q |
117 |
gaatttagctgggttaggttcctaacagaacctatcaatagaatatatgtttacgttgctacttaacagatttgagttcatctca |
201 |
Q |
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| T |
28071915 |
gaatttagctgggttaggttctgttaggaacctatcaatagaatatatttttacgttgcta--taacagatttgagttcaactca |
28071997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 170
Target Start/End: Complemental strand, 26415569 - 26415454
Alignment:
| Q |
43 |
gaatgttggcttcagtatataaacaagtggcagtttttctaaatttgagttactttttagttaagattagaaatgaatttagctgggttaggttcctaac |
142 |
Q |
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| T |
26415569 |
gaatgctggcttcagtatataaacaagtagcagttat---aaatttcagttacttt---------attagaaatgaatttagctgggttaggttctgtta |
26415482 |
T |
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| Q |
143 |
agaacctatcaatagaatatatgtttac |
170 |
Q |
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| T |
26415481 |
ggaacctatcaatggaatatatgtttac |
26415454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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