View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14986_low_4 (Length: 446)

Name: NF14986_low_4
Description: NF14986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14986_low_4
NF14986_low_4
[»] chr8 (10 HSPs)
chr8 (16-430)||(37829663-37830071)
chr8 (241-397)||(12721430-12721586)
chr8 (301-397)||(12723987-12724083)
chr8 (272-397)||(18140256-18140381)
chr8 (277-392)||(12646198-12646313)
chr8 (277-392)||(12651330-12651445)
chr8 (300-381)||(12704857-12704938)
chr8 (300-381)||(6116957-6117038)
chr8 (272-397)||(18095526-18095651)
chr8 (272-392)||(18081321-18081441)
[»] chr1 (3 HSPs)
chr1 (234-433)||(22536039-22536233)
chr1 (259-397)||(17747239-17747377)
chr1 (17-72)||(22536379-22536434)
[»] scaffold0129 (1 HSPs)
scaffold0129 (273-326)||(9553-9606)


Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 430
Target Start/End: Original strand, 37829663 - 37830071
Alignment:
Q  16 caatatttacgtcatgtaattaatgtggaagatcactgttatcttgtttttctatttattttcaggttttcctttcaccactttaattgattttctatat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37829663 caatatttacgtcatgtaattaatgtggaagatcactgttatcttgtttttctatttattttcaggttttcctttcaccactttaattgattttctatat 37829762  T
Q  116 aataatagggagttcggaaagagaggattcaaataaatctcatggtgcaaatatagcaatctgtccttttgctttgcactttgctcattcggctttgctg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37829763 aataatagggagttcggaaagagaggattcaaataaatctcatg-tgcaaatatagcaatctgtccttttgctttgcactttgctcattcggctttgctg 37829861  T
Q  216 tccggcatttcctttaaggatgactgctgcaccaacaaataaaaaggttagtagtgctcacatacacgatgacattgcaatctttattctctccaaattg 315  Q
    |||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37829862 tccggcttttcctttaaggatgaatgctgcaacaacaaataaaaaggttagtagtgctcacatacacgatgacattgcaatctttattctctccaaattg 37829961  T
Q  316 cctcttaaatccctcacacgttttacttgcgttcaaaaaccattgtctcttttattccaaaacccttttttcatgaatatgtaatgtaacacaataattt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||    
T  37829962 cctcttaaatccctcacacgttttacttgcgttcaaaaaccattgtctcttttattccaaaacccttttttcatgaat-----atgtaacacaataattt 37830056  T
Q  416 cttatccaaacatga 430  Q
    |||||||||||||||    
T  37830057 cttatccaaacatga 37830071  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 241 - 397
Target Start/End: Original strand, 12721430 - 12721586
Alignment:
Q  241 gctgcaccaacaaataaaaaggttagtagtgctcacatacacgatgacattgcaatctttattctctccaaattgcctcttaaatccctcacacgtttta 340  Q
    |||||| |||||||||| |||||||||| | ||||||||||||| ||||||||  ||| |||||||||||||||||| |||||||| |||| ||| || |    
T  12721430 gctgcatcaacaaataagaaggttagtaattctcacatacacgacgacattgctttctctattctctccaaattgccgcttaaatctctcaaacgattca 12721529  T
Q  341 cttgcgttcaaaaaccattgtctcttttattccaaaacccttttttcatgaatatgt 397  Q
    |||| ||| ||||| ||| || ||||||||||||||||||| | |||||||||||||    
T  12721530 cttgtgttaaaaaatcatggtttcttttattccaaaaccctatattcatgaatatgt 12721586  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 301 - 397
Target Start/End: Original strand, 12723987 - 12724083
Alignment:
Q  301 attctctccaaattgcctcttaaatccctcacacgttttacttgcgttcaaaaaccattgtctcttttattccaaaacccttttttcatgaatatgt 397  Q
    |||||||||||||||||||||||||| ||||||||||| ||||| | ||||||| ||| ||||||||| ||||||||| || |||||||||| ||||    
T  12723987 attctctccaaattgcctcttaaatctctcacacgtttcacttgtgctcaaaaatcatggtctcttttgttccaaaactctattttcatgaacatgt 12724083  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 272 - 397
Target Start/End: Complemental strand, 18140381 - 18140256
Alignment:
Q  272 ctcacatacacgatgacattgcaatctttattctctccaaattgcctcttaaatccctcacacgttttacttgcgttcaaaaaccattgtctcttttatt 371  Q
    ||||||| ||||||||||||||  |||  |||||||| ||||||||| ||||||| |||| ||||||||| || | | ||||| ||| ||| ||||||||    
T  18140381 ctcacattcacgatgacattgctttctccattctctctaaattgcctattaaatctctcaaacgttttacctgtgctaaaaaatcatggtcacttttatt 18140282  T
Q  372 ccaaaacccttttttcatgaatatgt 397  Q
    ||||||||||  ||||||||| ||||    
T  18140281 ccaaaaccctaatttcatgaacatgt 18140256  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 277 - 392
Target Start/End: Original strand, 12646198 - 12646313
Alignment:
Q  277 atacacgatgacattgcaatctttattctctccaaattgcctcttaaatccctcacacgttttacttgcgttcaaaaaccattgtctcttttattccaaa 376  Q
    |||||||||||||||||  |||  || |||||||||||||||||||||||||||||| | || || || | | | ||||||| |||||||||||| ||||    
T  12646198 atacacgatgacattgctctctcaatactctccaaattgcctcttaaatccctcacaagattcacctgtgctaagaaaccatggtctcttttatttcaaa 12646297  T
Q  377 acccttttttcatgaa 392  Q
    |||||  |||||||||    
T  12646298 accctcatttcatgaa 12646313  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 392
Target Start/End: Original strand, 12651330 - 12651445
Alignment:
Q  277 atacacgatgacattgcaatctttattctctccaaattgcctcttaaatccctcacacgttttacttgcgttcaaaaaccattgtctcttttattccaaa 376  Q
    |||||||||||| ||||  ||| ||| ||||||||||||||||||||||| ||||||||  | || || | | | |||  || |||||||||||| ||||    
T  12651330 atacacgatgacgttgctttctctatactctccaaattgcctcttaaatctctcacacgactcacctgtgctaagaaataatggtctcttttatttcaaa 12651429  T
Q  377 acccttttttcatgaa 392  Q
    |||||  |||||||||    
T  12651430 accctcatttcatgaa 12651445  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 381
Target Start/End: Original strand, 12704857 - 12704938
Alignment:
Q  300 tattctctccaaattgcctcttaaatccctcacacgttttacttgcgttcaaaaaccattgtctcttttattccaaaaccct 381  Q
    |||||| ||||||||||||||||||||||||| ||| || || || ||| ||||| |||| || |||||||| |||| ||||    
T  12704857 tattctttccaaattgcctcttaaatccctcaaacgattcacatgtgttaaaaaatcattttcccttttatttcaaagccct 12704938  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 381
Target Start/End: Original strand, 6116957 - 6117038
Alignment:
Q  300 tattctctccaaattgcctcttaaatccctcacacgttttacttgcgttcaaaaaccattgtctcttttattccaaaaccct 381  Q
    |||||| ||||||||||||||||||||||||| ||| || || || ||| ||||| |||| || ||||| ||| ||| ||||    
T  6116957 tattctttccaaattgcctcttaaatccctcaaacgattcacatgtgttaaaaaatcattttcccttttgttcgaaagccct 6117038  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 397
Target Start/End: Original strand, 18095526 - 18095651
Alignment:
Q  272 ctcacatacacgatgacattgcaatctttattctctccaaattgcctcttaaatccctcacacgttttacttgcgttcaaaaaccattgtctcttttatt 371  Q
    ||||||| ||||| ||||||||  |||  |||||||||||||| ||||| ||||| |||| |||||| || || | | | ||| ||| ||| ||| | ||    
T  18095526 ctcacattcacgaagacattgctttctccattctctccaaattacctctcaaatcactcaaacgtttcacctgtgctaacaaatcatggtcacttctttt 18095625  T
Q  372 ccaaaacccttttttcatgaatatgt 397  Q
    ||||||||||  ||||||||| ||||    
T  18095626 ccaaaaccctaatttcatgaacatgt 18095651  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 392
Target Start/End: Original strand, 18081321 - 18081441
Alignment:
Q  272 ctcacatacacgatgacattgcaatctttattctctccaaattgcctcttaaatccctcacacgttttacttgcgttcaaaaaccattgtctcttttatt 371  Q
    ||||||| ||||||||||||||  |||  ||||| || ||||| |||   ||||| ||||||||||| ||||| | | ||||| ||| ||||||| | ||    
T  18081321 ctcacattcacgatgacattgctttctccattctttctaaattaccttacaaatctctcacacgtttcacttgtgctaaaaaatcatggtctcttctttt 18081420  T
Q  372 ccaaaacccttttttcatgaa 392  Q
     |||||||||  |||||||||    
T  18081421 tcaaaaccctaatttcatgaa 18081441  T

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Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 234 - 433
Target Start/End: Complemental strand, 22536233 - 22536039
Alignment:
Q  234 gatgactgctgcaccaacaaataaaaaggttagtagtgctcacatacacgatgacattgcaatctttattctctccaaattgcctcttaaatccctcaca 333  Q
    |||| |||||||| ||||||||||| ||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  22536233 gatggctgctgcaacaacaaataaacaggttagaagtgctcacatacacgacgacattgcagtctttattctctccaaattgcctcttaaatccctcgca 22536134  T
Q  334 cgttttacttgcgttcaaaaaccattgtctcttttattccaaaacccttttttcatgaatatgtaatgtaacacaataatttcttatccaaacatgatga 433  Q
    || |||||||||||||||||| ||| ||||||||||||| |||||||||||||  ||||      ||||  ||||||||||||||||||||| |||||||    
T  22536133 cgatttacttgcgttcaaaaatcatggtctcttttattcgaaaaccctttttttgtgaa-----catgttccacaataatttcttatccaaagatgatga 22536039  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 259 - 397
Target Start/End: Original strand, 17747239 - 17747377
Alignment:
Q  259 aaggttagtagtgctcacatacacgatgacattgcaatctttattctctccaaattgcctcttaaatccctcacacgttttacttgcgttcaaaaaccat 358  Q
    |||||||||| | || |||||||||| ||||||||  ||| ||||||||||||| ||||| ||||||| |||||| | ||||| || | | ||||| |||    
T  17747239 aaggttagtacttctaacatacacgacgacattgctttctctattctctccaaactgcctattaaatctctcacatgatttacatgtgctaaaaaatcat 17747338  T
Q  359 tgtctcttttattccaaaacccttttttcatgaatatgt 397  Q
     |||| || | |||||||| | || ||||||||||||||    
T  17747339 ggtcttttcttttccaaaagctttatttcatgaatatgt 17747377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 22536434 - 22536379
Alignment:
Q  17 aatatttacgtcatgtaattaatgtggaagatcactgttatcttgtttttctattt 72  Q
    ||||||| |||||||| ||||||||||||||||  ||||||| | |||||||||||    
T  22536434 aatattttcgtcatgttattaatgtggaagatcgttgttatcatctttttctattt 22536379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 326
Target Start/End: Original strand, 9553 - 9606
Alignment:
Q  273 tcacatacacgatgacattgcaatctttattctctccaaattgcctcttaaatc 326  Q
    |||||| ||| ||||||||||| | |  ||||||||||||||||||||||||||    
T  9553 tcacatccacaatgacattgcattttccattctctccaaattgcctcttaaatc 9606  T

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