View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14986_low_5 (Length: 445)
Name: NF14986_low_5
Description: NF14986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14986_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 14559900 - 14559486
Alignment:
| Q |
18 |
gcattaggccgaggaacttgttgttaaggctgattaagtgatcttggcagctttcttttaacatttgtcaagacagtagttgttgtttttccagaatcag |
117 |
Q |
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| T |
14559900 |
gcattaggccgaggaacttgttgttgaggctgattaagtgatcttggcagctttcttttaacatttgtcaagacagtagttgttgtttttccagaatcag |
14559801 |
T |
|
| Q |
118 |
gtgttggagcagcagttggttttggttcatcagttgatgctgaggcaaacttgttgagtagattaacaccagatacatatttccttggtattagattcaa |
217 |
Q |
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| T |
14559800 |
gtgttggagcagcagttggttttggttcatcagttgatgctgaggcaaacttgttgagtagattaacaccagatacatatttccttggtattagattcaa |
14559701 |
T |
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| Q |
218 |
tggacatattctattttgttgattaactgaaggatttgtcttattttgaagagattggttggaaaaatttagctggttcagtgtaactgaagtgatatct |
317 |
Q |
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| T |
14559700 |
tggacatattctattttgttgattaactgaaggatttgtcttattttgaagagattggttggaaaaatttagctggttcagtgtaactgaagtgatatct |
14559601 |
T |
|
| Q |
318 |
gcaagtggtgttaaagaaggggaactttttatatcaagtgattttttattgactttggaactggaaacctctttctttgttgtcttttgtttagcaaatt |
417 |
Q |
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| T |
14559600 |
gcaagtggtgttaaagaaggggaactttttatatcaagtgattttttattgactttggaactggaaacctctttctttgttgtcttttgtttagcaaatt |
14559501 |
T |
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| Q |
418 |
gggaccatctctttc |
432 |
Q |
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| T |
14559500 |
gggacaatctctttc |
14559486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 65 - 432
Target Start/End: Complemental strand, 19768505 - 19768138
Alignment:
| Q |
65 |
cagctttcttttaacatttgtcaagacagtagttgttgtttttccagaatcaggtgttggagcagcagttggttttggttcatcagttgatgctgaggca |
164 |
Q |
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| T |
19768505 |
cagctttcttttaacatttgtcaagacagtagttgttgtttttccagaatcaggtgttggagcagcagttggttttggttcatcagttgatactgaggca |
19768406 |
T |
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| Q |
165 |
aacttgttgagtagattaacaccagatacatatttccttggtattagattcaatggacatattctattttgttgattaactgaaggatttgtcttatttt |
264 |
Q |
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| T |
19768405 |
aacttgttgagtagattaacaccagatacatatttccttggtattaggttcaatggacatattctattttgttgattaactgaaggatttgtcttatttt |
19768306 |
T |
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| Q |
265 |
gaagagattggttggaaaaatttagctggttcagtgtaactgaagtgatatctgcaagtggtgttaaagaaggggaactttttatatcaagtgatttttt |
364 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
19768305 |
aaagagattggttggaagaattttgctggttcagtgtaactgaagtgatatctgcaagtggtgttaaagaatgagaactttttatatcaagtgatttttt |
19768206 |
T |
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| Q |
365 |
attgactttggaactggaaacctctttctttgttgtcttttgtttagcaaattgggaccatctctttc |
432 |
Q |
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| T |
19768205 |
attgactttggaactggaaacctctttctttgatgtcttttgtttagcaacttgggacaatctctttc |
19768138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 19771029 - 19770992
Alignment:
| Q |
34 |
cttgttgttaaggctgattaagtgatcttggcagcttt |
71 |
Q |
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| T |
19771029 |
cttgttgttgaggctgattaagtgatcttggcagcttt |
19770992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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