View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14986_low_6 (Length: 440)
Name: NF14986_low_6
Description: NF14986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14986_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 10 - 420
Target Start/End: Original strand, 28830943 - 28831353
Alignment:
| Q |
10 |
aagaatatattagtagaacatgatttcatattaattaagcaaactggtttaatcacataacatgtacataattaagcatgaaacacaaattttgctgagt |
109 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28830943 |
aagaaaatattagtggaacatgatttcatattaattaagcaaactggtttaatcacataacatgtacataattaagcatgaaacacaaattttgctgagt |
28831042 |
T |
|
| Q |
110 |
tatccgtattcaaccaataacactaggttttattcgtatggattaaattgtgagtcatgcaaagagaccacacacaaacttaaaatgtcttttataaaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28831043 |
tatccgtattcaaccaataacactaggttttattcgtatggattaaattgtgagtcatgcaaagagaccacacacaaacttaaaatgtcttttataaaaa |
28831142 |
T |
|
| Q |
210 |
tgaccggaaggtttatgtcctaatattttatcatatgactttcactaaacagcggtggaaactgcataagagaggcatgcatttggagcttgtggacaag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28831143 |
tgaccggaaggtttatgtcctaatattttatcatatgactttcactaaacagcggtggaaactgcataagagaggcatgcatttggagcttgtggacaag |
28831242 |
T |
|
| Q |
310 |
gccttagaccataatgactatgatggagaagtaaagaaaatgatagagattgctttactatgcattcaagcatcagctggaatgagaccaacattgtctg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28831243 |
gccttagaccataatgactatgatggagaagtaaagaaaatgatagagattgctttactatgcattcaagcatcagctggaatgagaccaacattgtctg |
28831342 |
T |
|
| Q |
410 |
aagtagaagtc |
420 |
Q |
| |
|
||||||||||| |
|
|
| T |
28831343 |
aagtagaagtc |
28831353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 151 - 420
Target Start/End: Original strand, 28839121 - 28839400
Alignment:
| Q |
151 |
attaaattgtgagtcatgcaaagagaccacacacaaacttaaaatgtcttttataaaaatgaccggaaggtttatgtcctaatattttatcatatga--- |
247 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||| | | |||||||| ||||||||| ||| | ||||||||||||||||||| |
|
|
| T |
28839121 |
attaaattgtgagtcatgtgaagagaccacaaacaaacttaaaatttatcttataaaattgaccggaataagtatttactaatattttatcatatgatct |
28839220 |
T |
|
| Q |
248 |
----ctttcactaaacagcggtggaaactgcataagagaggcatgcatttggagcttgtggacaaggccttagaccataatgactatgatggagaa---g |
340 |
Q |
| |
|
|||| ||||||| | ||| ||||||| |||||||||||||||||||| | |||||||||| ||| |||| | |||||||| |||||||| | |
|
|
| T |
28839221 |
ttgactttggctaaacatagaaggagactgcatgagagaggcatgcatttggaggtcgtggacaaggtcttggaccctgatgactataatggagaataag |
28839320 |
T |
|
| Q |
341 |
taaagaaaatgatagagattgctttactatgcattcaagcatcagctggaatgagaccaacattgtctgaagtagaagtc |
420 |
Q |
| |
|
| ||||||||||||| |||||||||| |||| | |||||||||||||||||||| ||||||| |||||||||||| |||| |
|
|
| T |
28839321 |
tgaagaaaatgatagtgattgctttattatgtactcaagcatcagctggaatgaaaccaacaatgtctgaagtagtagtc |
28839400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 265 - 413
Target Start/End: Original strand, 28836609 - 28836760
Alignment:
| Q |
265 |
tggaaactgcataagagaggcatgcatttggagcttgtggacaaggccttagaccataatgactatgatgg---agaagtaaagaaaatgatagagattg |
361 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
28836609 |
tggaaactgcatgagagaggcatgcacttggagctcgtggacaaggccttagaccctaatgactatgatggagaagaagtgaagaaaatgatagagattg |
28836708 |
T |
|
| Q |
362 |
ctttactatgcattcaagcatcagctggaatgagaccaacattgtctgaagt |
413 |
Q |
| |
|
|| | | || | |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28836709 |
ctctgttgtgtactcaagcatcagctggaatgagaccaacaatgtctgaagt |
28836760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 265 - 420
Target Start/End: Original strand, 28827270 - 28827428
Alignment:
| Q |
265 |
tggaaactgcataagagaggcatgcatttggagcttgtggacaaggccttagaccataatgactatgatggagaagta---aagaaaatgatagagattg |
361 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||| || ||||||| |||||||| ||| |||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
28827270 |
tggaaactgcatgagagaggcatgcacttggagctagtcgacaaggtcttagaccctaacgactatgatggagaagaagtgaagaaaatgatagagattg |
28827369 |
T |
|
| Q |
362 |
ctttactatgcattcaagcatcagctggaatgagaccaacattgtctgaagtagaagtc |
420 |
Q |
| |
|
|||| | || | ||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
28827370 |
ctttgttgtgtactcaagcatcagctggaatgagaccaacgatgtctgaagtagtagtc |
28827428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 9450098 - 9450000
Alignment:
| Q |
149 |
ggattaaattgtgagtcatgcaaagagaccacacacaaacttaaaatgtcttttataaaaatgaccggaaggtttatgtcctaatattttatcatatga |
247 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| ||||||||||||| ||| |||||||||||||||||| | ||| ||||||||||||||||||| |
|
|
| T |
9450098 |
ggattaaattgcgagtcatgcgaagagaccacaaacaaacttaaaatttctcttataaaaatgaccggaatgagtatccactaatattttatcatatga |
9450000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 46922951 - 46922993
Alignment:
| Q |
73 |
gtacataattaagcatgaaacacaaattttgctgagttatccg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46922951 |
gtacataattaagcatgaaacacaaattttgctgagttatccg |
46922993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 28839034 - 28839084
Alignment:
| Q |
17 |
tattagtagaacatgatttcatattaattaagcaaactggtttaatcacat |
67 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
28839034 |
tattagtggaacatgatttcatattaattaagaaaactagtttaatcacat |
28839084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 47466971 - 47467104
Alignment:
| Q |
12 |
gaatatattagtagaacatgatttcatattaatta--agcaaactggtttaatcacataacatgtacataattaagcatgaaacacaaattttgctgagt |
109 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||| ||| || |||||||||||||||||||||||||||| |
|
|
| T |
47466971 |
gaatatattagtagaacatgatttcacattaattataagcaaattggtttaatcacataacatggacacaactaagcatgaaacacaaattttgctgagt |
47467070 |
T |
|
| Q |
110 |
tatccgtattcaaccaataacactaggttttatt |
143 |
Q |
| |
|
|||||| |||| |||||| ||| | ||||||||| |
|
|
| T |
47467071 |
tatccgcattcgaccaatgacaatcggttttatt |
47467104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 47227646 - 47227481
Alignment:
| Q |
16 |
atattagtagaacatgatttcatattaatt--aagcaaactggtttaatcacataacatgtacataattaagcatgaaacacaaattttgctgagttatc |
113 |
Q |
| |
|
|||||||| |||||||||| || |||||| ||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| |||||| ||| |
|
|
| T |
47227646 |
atattagtggaacatgattgcacgttaattttaagcaaactggtttaatcatgtaacatgtatataattaagcatggaacacaaatttggctgagctata |
47227547 |
T |
|
| Q |
114 |
cgtattcaaccaataacactaggttttattcgtatgg-attaaattgtgagtcatgcaaagagacca |
179 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||| ||||| || ||||| |||||||||||||| |
|
|
| T |
47227546 |
cgtattcaaccaataacaatcagttttattcgtatgggattaactt-tgagttatgcaaagagacca |
47227481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 104 - 339
Target Start/End: Complemental strand, 1466210 - 1465963
Alignment:
| Q |
104 |
ctgagttatccgtattcaaccaataacactaggttttattcgtat-----ggattaaattgtgagtcatgcaaagagaccacacacaaacttaaaatgtc |
198 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| ||||| ||| ||||||||||||||||||| ||||||||||| ||||||||||||| || |
|
|
| T |
1466210 |
ctgatttatccgtattcaaccaataacactcagttgtattcatatatatgggattaaattgtgagtcataagaagagaccacaaacaaacttaaaatttc |
1466111 |
T |
|
| Q |
199 |
ttttataaaaatgaccggaaggtttatgtcctaatattttatcatatga-------ctttcactaaacagcggtggaaactgcataagagaggcatgcat |
291 |
Q |
| |
|
| ||| |||||||||| ||| | ||| | |||||||| |||||||||| ||||| |||||||| |||||||||||| |||||||||||| | |
|
|
| T |
1466110 |
tcttacaaaaatgaccagaatgagtatttactaatattgtatcatatgatctttgactttcgctaaacagacatggaaactgcatgagagaggcatgcgt |
1466011 |
T |
|
| Q |
292 |
ttggagcttgtggacaaggccttagaccataatgactatgatggagaa |
339 |
Q |
| |
|
|||| ||| |||||||||| ||| |||| | |||||||| |||||||| |
|
|
| T |
1466010 |
ttggtgctcgtggacaaggtcttggaccctgatgactataatggagaa |
1465963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 1466253 - 1466203
Alignment:
| Q |
10 |
aagaatatattagtagaacatgatttcatattaattaagcaaactggttta |
60 |
Q |
| |
|
||||| |||||||| ||| |||||||||||||||||||| |||||| |||| |
|
|
| T |
1466253 |
aagaaaatattagtggaatatgatttcatattaattaagaaaactgattta |
1466203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University