View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14986_low_8 (Length: 426)
Name: NF14986_low_8
Description: NF14986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14986_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Complemental strand, 11036236 - 11035836
Alignment:
| Q |
19 |
ggtgtgactcctcaaaatcctcataatcaaaatcttcccatttatgtgagcgaatttcatttcatgtggtatttacctctcggcaagataagagaaaaag |
118 |
Q |
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| T |
11036236 |
ggtgtgactcctcaaaatcctcataatcaaaatctccccatttatgtgagcgaatttcat-----gtggtatttacctctcggcaagataagagaaaaag |
11036142 |
T |
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| Q |
119 |
gttctcaccatctcacaagtccactttgcatgatagcaagtggaaccatattagtatgaggcatatctatgttgtgctgctgctgctgc---ccattcac |
215 |
Q |
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| T |
11036141 |
gttctcaccatctcacaagtccactttgcatgatagcaagtggaaccatattagtatgaggcatatctatgttgtgctgctgctgctgctgcccattcac |
11036042 |
T |
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| Q |
216 |
cgccggtgaaggggcggtactggaacgacaaacagggcaattcgaatgcgaatgaagccacatgtcaatacatgaaacatgaaaagagtgcaagcactca |
315 |
Q |
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| T |
11036041 |
caccggtgaaggggcggtactggaacgacaaacggggcaattcgaatgtgaatgaagccacatgtcaatacatgaaacatgaaaagagtgtaagcactca |
11035942 |
T |
|
| Q |
316 |
ggcatagtcctcaactcttcaccctcctcaaaatctcccaaacacacggcacacgtgtcgccttcgccatctggaacagcatcatctttatttctcctat |
415 |
Q |
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| T |
11035941 |
ggcatagtcctcaactcttcaccctcctcaaaatctcccaaacacacggcacacgtgtcgccttcgccatctggaacagcatcatctttatttctcttat |
11035842 |
T |
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| Q |
416 |
gctact |
421 |
Q |
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| T |
11035841 |
ggtact |
11035836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 217 - 411
Target Start/End: Complemental strand, 11034356 - 11034162
Alignment:
| Q |
217 |
gccggtgaaggggcggtactggaacgacaaacagggcaattcgaatgcgaatgaagccacatgtcaatacatgaaacatgaaaagagtgcaagcactcag |
316 |
Q |
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||||| |||||||||| ||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
11034356 |
gccggcgaaggggcggcactggaacgacaaacggggcaattcaaatgcgaatggagccacatgtcaatacactttacatgaaaagaatgcaagcactcag |
11034257 |
T |
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| Q |
317 |
gcatagtcctcaactcttcaccctcctcaaaatctcccaaacacacggcacacgtgtcgccttcgccatctggaacagcatcatctttatttctc |
411 |
Q |
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||||||||||||| || ||||| ||||||||||||||||||||||| ||||| ||| |||||||| |||||| |||| | ||| |||| |||||| |
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| T |
11034256 |
gcatagtcctcaattcctcaccttcctcaaaatctcccaaacacaccgcacatgtgccgccttcgtcatctgtaacaacgtcacctttgtttctc |
11034162 |
T |
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