View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14987_high_6 (Length: 226)
Name: NF14987_high_6
Description: NF14987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14987_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 26128079 - 26128158
Alignment:
| Q |
18 |
cacaccttgctacggggtacatattttttctataaaattctctaaatggaataaaaagggttctatactagggtcaacac |
97 |
Q |
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| T |
26128079 |
cacaccttgttacgggatacatattttttctataaaattctctaagtggaataaaaagggttctatactagggtcaacac |
26128158 |
T |
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Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 26128215 - 26128268
Alignment:
| Q |
156 |
tacatcaaccctaattctataaaagcaacatgcaaaccactgtaacaggacaca |
209 |
Q |
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| T |
26128215 |
tacatcaaccctaattctataaaagcaacctgcaaaccactgtaacaggacaca |
26128268 |
T |
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