View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14987_low_3 (Length: 325)
Name: NF14987_low_3
Description: NF14987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14987_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 170 - 309
Target Start/End: Original strand, 41823162 - 41823301
Alignment:
| Q |
170 |
gactcgttgatcataacaataaacatcaaatagtaaattaagcatattctatttttgcaaattaattgatataagaataagagcatcaacaaccttttca |
269 |
Q |
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| T |
41823162 |
gactcattgatcataacaataaacatcaaatagtaaattaagcatattctatttttgcaaattaattgatataagaataagagcatcaacaaccttttca |
41823261 |
T |
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| Q |
270 |
acaaccctagcatattttgggaatgaagggacatcaaaat |
309 |
Q |
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| T |
41823262 |
acaaccctagcatattttgggaatgaagggacatcaaaat |
41823301 |
T |
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Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 41822999 - 41823098
Alignment:
| Q |
9 |
agcataggtgataggtaattatagtgaaagatcaaaatcac--caaataaaaactagagaacacaatacataaatcacaagtcatgcaattcaaactgtc |
106 |
Q |
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| T |
41822999 |
agcataggagataggtaattatagtgaaagatcaaaatcacaccaaataaaaactagagaacacaatacataaatcacaagtcatgcaattcaaactgtc |
41823098 |
T |
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