View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14987_low_4 (Length: 276)

Name: NF14987_low_4
Description: NF14987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14987_low_4
NF14987_low_4
[»] chr3 (4 HSPs)
chr3 (19-276)||(8528214-8528477)
chr3 (91-178)||(30700321-30700408)
chr3 (113-179)||(31795397-31795463)
chr3 (113-179)||(41081826-41081892)
[»] chr8 (2 HSPs)
chr8 (97-191)||(3157990-3158084)
chr8 (145-202)||(2687106-2687163)
[»] chr4 (3 HSPs)
chr4 (91-179)||(33607492-33607580)
chr4 (91-191)||(42889757-42889857)
chr4 (91-191)||(54534990-54535090)
[»] chr1 (3 HSPs)
chr1 (91-202)||(31321010-31321119)
chr1 (113-191)||(50317019-50317097)
chr1 (116-179)||(22684122-22684185)
[»] chr7 (3 HSPs)
chr7 (91-191)||(11671233-11671333)
chr7 (113-179)||(12180608-12180674)
chr7 (113-179)||(46246544-46246610)
[»] chr5 (3 HSPs)
chr5 (91-191)||(27756732-27756832)
chr5 (115-178)||(37498866-37498929)
chr5 (113-179)||(38626139-38626205)
[»] chr2 (2 HSPs)
chr2 (113-189)||(38728198-38728274)
chr2 (113-179)||(40304731-40304797)
[»] chr6 (2 HSPs)
chr6 (113-202)||(4496506-4496593)
chr6 (91-179)||(1443441-1443529)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 8528214 - 8528477
Alignment:
Q  19 gatttatgcagtgtgcggattcatagatgcactgtaatttcctatgaatcttcatctcctaccctcat-----ttttggactaaaagcaaaatatttaga 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||     |||||||||||||||||||||||||||    
T  8528214 gatttatgcagtgtgcggattcatagatgcactgtaatttcctatgaatcttcatctcctacacccattttaattttggactaaaagcaaaatatttaga 8528313  T
Q  114 acttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttacttggacgatttaaccatttaagcttc-nnnnnnn 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  8528314 acttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttacttggacgatttaaccatttaagcttctttttttt 8528413  T
Q  213 nacaactaatcattgtctctttatttgctattctaataagccttattcattttcaagctcatct 276  Q
     |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8528414 tacaactaatcattgtctctttatttgctattctaataagctttattcattttcaagctcatct 8528477  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 30700408 - 30700321
Alignment:
Q  91 ggactaaaagcaaaatatttagaacttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaactta 178  Q
    |||| ||||||||||| |||| |||||||||||| ||| ||  ||||||  |||||||| || ||||||||||| ||||| |||||||    
T  30700408 ggaccaaaagcaaaatgtttataacttacagggtgtgttttagaacaaaaaaagatacaaggacgaaaaccaaaaacacgcgaactta 30700321  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 31795463 - 31795397
Alignment:
Q  113 aacttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttac 179  Q
    |||||||||||||||| ||  ||||||  |||||||| || ||||||||||| ||||| ||||||||    
T  31795463 aacttacagggtttgttttagaacaaaaaaagatacagggccgaaaaccaaaaacacgcgaacttac 31795397  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 41081892 - 41081826
Alignment:
Q  113 aacttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttac 179  Q
    |||||||||||||||| ||  ||||||  |||||||| || ||||||||||| ||||| ||||||||    
T  41081892 aacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttac 41081826  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 3157990 - 3158084
Alignment:
Q  97 aaagcaaaatatttagaacttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttacttggacgattta 191  Q
    |||||||||| |||| |||||||||||| ||| ||  ||||||  |||||||| || ||||||||||| ||||| ||||||||  ||||||||||    
T  3157990 aaagcaaaatgtttataacttacagggtctgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttacagggacgattta 3158084  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 2687163 - 2687106
Alignment:
Q  145 atacatgggcgaaaaccaaatacacgtgaacttacttggacgatttaaccatttaagc 202  Q
    |||||||||| ||||| ||| ||| |||||||||| ||||||||||||| ||||||||    
T  2687163 atacatgggcaaaaactaaaaacatgtgaacttacatggacgatttaactatttaagc 2687106  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 33607580 - 33607492
Alignment:
Q  91 ggactaaaagcaaaatatttagaacttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttac 179  Q
    ||||||||| |||||| |||| |||||||||||||||| ||  || |||  |||||||| || ||||||||||| ||||| ||||||||    
T  33607580 ggactaaaaccaaaatgtttacaacttacagggtttgttttagaaaaaaaaaagatacaaggacgaaaaccaaaaacacgcgaacttac 33607492  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 42889757 - 42889857
Alignment:
Q  91 ggactaaaagcaaaatatttagaacttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttacttggacgattt 190  Q
    |||| ||||||||||| |||| |||||||| ||| ||| ||  ||||||  |||||||| || ||||||| ||| ||||||||||||||  |||||||||    
T  42889757 ggaccaaaagcaaaatgtttataacttacatggtctgttttagaacaaaaaaagatacaaggacgaaaacaaaaaacacgtgaacttacagggacgattt 42889856  T
Q  191 a 191  Q
    |    
T  42889857 a 42889857  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 54535090 - 54534990
Alignment:
Q  91 ggactaaaagcaaaatatttagaacttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttacttggacgattt 190  Q
    |||| |||||||||| ||||| || |||| |||| | | ||  ||||||  |||| ||| || ||||||||||| ||||| |||||||| ||||||||||    
T  54535090 ggacaaaaagcaaaacatttataatttacggggtctattttagaacaaaaaaagacacagggacgaaaaccaaaaacacgcgaacttacatggacgattt 54534991  T
Q  191 a 191  Q
    |    
T  54534990 a 54534990  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 31321119 - 31321010
Alignment:
Q  91 ggactaaaagcaaaatatttagaacttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttacttggacgattt 190  Q
    |||| ||||||||||| |||  |  ||||||||||||| | ||||||||  |||||||| || ||||||||||| ||||| ||||||||  ||| |||||    
T  31321119 ggaccaaaagcaaaatgtttgtattttacagggtttgtttcgcaacaaa--aagatacagggacgaaaaccaaaaacacgcgaacttacagggatgattt 31321022  T
Q  191 aaccatttaagc 202  Q
    ||| ||||||||    
T  31321021 aactatttaagc 31321010  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 50317019 - 50317097
Alignment:
Q  113 aacttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttacttggacgattta 191  Q
    |||||||||||||||| ||  ||||||  |||||||| || |||||| |||| ||||| |||||||| |||||||||||    
T  50317019 aacttacagggtttgttttagaacaaaaaaagatacagggacgaaaatcaaaaacacgcgaacttacatggacgattta 50317097  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 22684122 - 22684185
Alignment:
Q  116 ttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttac 179  Q
    ||||||||||||| ||  ||||||  ||||||||||| ||||||||||| ||||| ||||||||    
T  22684122 ttacagggtttgttttagaacaaaaaaagatacatggacgaaaaccaaaaacacgcgaacttac 22684185  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 11671233 - 11671333
Alignment:
Q  91 ggactaaaagcaaaatatttagaacttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttacttggacgattt 190  Q
    |||| |||| ||||| ||||  |||||||||||||||| ||  ||||||   |||||||||| ||||||| ||| ||||| ||||||||  |||||||||    
T  11671233 ggacgaaaatcaaaacatttgtaacttacagggtttgttttagaacaaaaatagatacatggacgaaaacaaaaaacacgcgaacttacggggacgattt 11671332  T
Q  191 a 191  Q
    |    
T  11671333 a 11671333  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 12180608 - 12180674
Alignment:
Q  113 aacttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttac 179  Q
    |||||||||||||||| ||  ||||||  |||||||| || ||||||||||| ||||| ||||||||    
T  12180608 aacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttac 12180674  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 46246544 - 46246610
Alignment:
Q  113 aacttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttac 179  Q
    |||||||||||||||| ||  ||||||  |||||||| || ||||||||||| ||||| ||||||||    
T  46246544 aacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttac 46246610  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 27756732 - 27756832
Alignment:
Q  91 ggactaaaagcaaaatatttagaacttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttacttggacgattt 190  Q
    |||| ||||||||||| |||| || ||||||||||||| ||  ||||||  |||||||| || ||||||| ||| ||||| |||||||   |||||||||    
T  27756732 ggaccaaaagcaaaatgtttataatttacagggtttgttttagaacaaaaaaagatacagggacgaaaacaaaaaacacgcgaacttagagggacgattt 27756831  T
Q  191 a 191  Q
    |    
T  27756832 a 27756832  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 178
Target Start/End: Original strand, 37498866 - 37498929
Alignment:
Q  115 cttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaactta 178  Q
    |||||| ||||||| |||||| |||  ||||||||||| ||||||||||| ||||| |||||||    
T  37498866 cttacaaggtttgttttgcaataaaaaaagatacatggacgaaaaccaaaaacacgcgaactta 37498929  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 38626139 - 38626205
Alignment:
Q  113 aacttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttac 179  Q
    |||||||||||||||| ||  ||||||  ||||||||||| ||||||||||| ||| | ||||||||    
T  38626139 aacttacagggtttgttttagaacaaaaaaagatacatggacgaaaaccaaaaacatgcgaacttac 38626205  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 38728274 - 38728198
Alignment:
Q  113 aacttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttacttggacgatt 189  Q
    ||||| |||||||||| ||  ||||||  ||||||||||| ||||||||||| || |||||||||||  ||||||||    
T  38728274 aacttgcagggtttgttttagaacaaaaaaagatacatggacgaaaaccaaaaactcgtgaacttacagggacgatt 38728198  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 40304731 - 40304797
Alignment:
Q  113 aacttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttac 179  Q
    |||||||||||||||| ||  ||||||  |||||||| || ||||||||||| ||||| ||||||||    
T  40304731 aacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttac 40304797  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 4496593 - 4496506
Alignment:
Q  113 aacttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttacttggacgatttaaccatttaagc 202  Q
    |||||||| ||||||| ||  ||||||| ||  ||||||| ||||||||||| ||||||||||||||   ||||||||| | ||||||||    
T  4496593 aacttacatggtttgttttagaacaaattaa--tacatggacgaaaaccaaaaacacgtgaacttacaatgacgatttacctatttaagc 4496506  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 1443529 - 1443441
Alignment:
Q  91 ggactaaaagcaaaatatttagaacttacagggtttgtattgcaacaaatgaagatacatgggcgaaaaccaaatacacgtgaacttac 179  Q
    ||||||||| |||||  || | ||||||| |||||||| ||  ||||||  || ||||| || ||||||||||| ||||||||||||||    
T  1443529 ggactaaaaccaaaaagttaacaacttaccgggtttgttttagaacaaaaaaaaatacagggacgaaaaccaaaaacacgtgaacttac 1443441  T

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