View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14987_low_5 (Length: 268)

Name: NF14987_low_5
Description: NF14987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14987_low_5
NF14987_low_5
[»] chr4 (4 HSPs)
chr4 (21-105)||(26230745-26230829)
chr4 (21-105)||(33550370-33550454)
chr4 (185-259)||(26230909-26230983)
chr4 (185-259)||(33550533-33550607)
[»] chr2 (2 HSPs)
chr2 (21-105)||(4684810-4684894)
chr2 (185-259)||(4684656-4684730)
[»] chr7 (2 HSPs)
chr7 (21-105)||(8335378-8335462)
chr7 (185-259)||(8335224-8335298)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 26230745 - 26230829
Alignment:
Q  21 gtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgttatca 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26230745 gtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgttatca 26230829  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 33550370 - 33550454
Alignment:
Q  21 gtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgttatca 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33550370 gtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgttatca 33550454  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 26230909 - 26230983
Alignment:
Q  185 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26230909 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg 26230983  T

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Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 33550533 - 33550607
Alignment:
Q  185 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33550533 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg 33550607  T

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Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 4684894 - 4684810
Alignment:
Q  21 gtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgttatca 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4684894 gtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgttatca 4684810  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 4684730 - 4684656
Alignment:
Q  185 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4684730 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg 4684656  T

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Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 8335462 - 8335378
Alignment:
Q  21 gtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaaggtacgttatca 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  8335462 gtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttcaacactccaatcaaggtacattatca 8335378  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 8335298 - 8335224
Alignment:
Q  185 agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg 259  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8335298 agatgttgcccgatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgctgtgatgatg 8335224  T

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