View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14988_low_2 (Length: 515)
Name: NF14988_low_2
Description: NF14988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14988_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 11 - 499
Target Start/End: Complemental strand, 36221248 - 36220767
Alignment:
| Q |
11 |
ttatacttgaggtgctggtgctaataaggtgtttagccttatgactaacgtgatgcggtttaaatcatgtatgggacaaattggcatcatatttaaatta |
110 |
Q |
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| T |
36221248 |
ttatacttgaggtgccggtgctaataaggtgtttagccttatgactaacccgatgcggtttaaatcaggtatgagacaaattgtcatcttatttaaatta |
36221149 |
T |
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| Q |
111 |
aaaattacatgtagttcgatttggacgataatttttataaaattaaaaaagataaatatttgctccgaactaaatatatgccgttaaatttgaattgatt |
210 |
Q |
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| T |
36221148 |
aaaattacatgtagtttgatttggacgataatttttataaaaata-------taaatattcgctccgaactaaatatatgccgttaaatttgaattgatt |
36221056 |
T |
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| Q |
211 |
ttttgatatcaatcatcatatccatctttctattgcaaatgcagctagcagccatcaagtaacacttttgatgtgcaactcatcaacccatctaaaagca |
310 |
Q |
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| T |
36221055 |
ttttgatatcaatcatcatatccatctttctattgcaaatgcagctatcagccatcaagtaacacttttgatgtgcaactcattaacccatctaaaagca |
36220956 |
T |
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| Q |
311 |
taaagtaaacatatatatcgcttcttcttcattgacactcaataatggtgagatccattctgnnnnnnnccaaaacaaaacacccttaatcatcaactcc |
410 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
36220955 |
taaagtaaacatatatatcgcttcttcttcatcgacactcaataatggtgagatccattctgtttttttccaaaacaaaacacccttaatcatcaattcc |
36220856 |
T |
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| Q |
411 |
atccttgtttcttgaattggaaaaagcaacatagacatcacttttgtaacaacttgtacttggtttcctccaaactgtgttgtcgattt |
499 |
Q |
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| T |
36220855 |
atccttgtttcttgaattggaaaaagcaacatagacatcacttttgtaacaacttgtacttggtttcctccaaactgtgttgtcgattt |
36220767 |
T |
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