View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14988_low_4 (Length: 334)
Name: NF14988_low_4
Description: NF14988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14988_low_4 |
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| [»] scaffold0520 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 131 - 316
Target Start/End: Complemental strand, 22822820 - 22822635
Alignment:
| Q |
131 |
tgctatatgttggatatgttttgtgcttgctacatgttataagtttcatggggagctaaaatcaacttaatcaatatgtgctattttgacatcatcaaaa |
230 |
Q |
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| T |
22822820 |
tgctaaatgctggatatgttttgtgcttgctacatgttataagtttcacggggagctaaaatcaacttaatcaacatgtgttcttttgacatcatcaaaa |
22822721 |
T |
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| Q |
231 |
ggggggagattgaagcatctggctaatttttgatgttgttagcttttagcttatagattaattgtgttgtgcattatatgttgatc |
316 |
Q |
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| T |
22822720 |
agggggagattgaagcctctaactagtttttgatgttgttagcttttagcttatagattaattgtgttgtgcattatatcttgatc |
22822635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 22840696 - 22840773
Alignment:
| Q |
7 |
ggagcacagatgactgacatgactcaagttttagctaatatcagcgaccttaaggcctacatgatacaaacgttcaat |
84 |
Q |
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| T |
22840696 |
ggagcacaaatgactgacatgactcaagttttagctagtatcagtgaccttaaggcctacatgatacaaacgttcaat |
22840773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 22822866 - 22822827
Alignment:
| Q |
112 |
atgtgtatggcttgctaaatgctatatgttggatatgttt |
151 |
Q |
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| T |
22822866 |
atgtgtatggcttgctaaatgttatatgttggatatgttt |
22822827 |
T |
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Target: scaffold0520 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0520
Description:
Target: scaffold0520; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 6002 - 6092
Alignment:
| Q |
201 |
tcaatatgtgctattttgacatcatcaaaaggggggagattgaagcatctggcta-atttttgatgttgttagcttttagcttatagatta |
290 |
Q |
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| T |
6002 |
tcaacatgtgctcttttgacatcatcaaaaagagggagattgaagcctccagctatagttttgatgatgttagcttttagattctagatta |
6092 |
T |
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