View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14988_low_6 (Length: 220)
Name: NF14988_low_6
Description: NF14988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14988_low_6 |
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| [»] scaffold0206 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 3477124 - 3476940
Alignment:
| Q |
19 |
atcatggtgctacaataattttgccaaacttattgctcatccaaacatacactcactcacacttacgttacacagcaaaactagtaacatgtagagtttt |
118 |
Q |
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| T |
3477124 |
atcatggtgctacaataattttgccaaacttattgctcatccaaacatacactcactcaaacttacgttacacaacaaaactagtaacatgtagagtttt |
3477025 |
T |
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| Q |
119 |
gtgttgccagttattatcatcaaatcaaaaaacccatcaaacaaacaactacaataaacttcaattcacaaggtactgctaaact |
203 |
Q |
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| T |
3477024 |
gtgttgccagttattatcatcaaatcaaaaaccccatcaaacaaacaactacaataaacttcaattcacaaggtactgctaaact |
3476940 |
T |
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Target: scaffold0206 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0206
Description:
Target: scaffold0206; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 16476 - 16293
Alignment:
| Q |
22 |
atggtgctacaataattttgccaaacttattgctcatccaaacatacactcactcacactt--acgttacacagcaaaactagtaacatgtagagttttg |
119 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
16476 |
atggggctacaataattttgccaaacttattgctcatccaaacatacactcactcacacttgcacgttacacaacaaaactagtaacatgtagagttttg |
16377 |
T |
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| Q |
120 |
tgttgccagttattatcatcaaatcaaaaaacccatcaaacaaacaactacaataaacttcaattcacaaggtactgctaaact |
203 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16376 |
tgttgcaagttattatcatcaaatcaaaaaccccatcaaacaaacaactacaataaacctcaattcacaaggtactgctaaact |
16293 |
T |
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