View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14989_high_1 (Length: 700)
Name: NF14989_high_1
Description: NF14989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14989_high_1 |
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| [»] scaffold0116 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 10 - 685
Target Start/End: Original strand, 29053155 - 29053807
Alignment:
| Q |
10 |
gtccaagaatatttaatagtaagtgagacttttttcgatccacaatagtaagtgaaacttaaaacaaagttaaatatatgtcgtctttttgtcaaaatat |
109 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29053155 |
gtccaataatatttaatagtaagtgaaacttttttcgatccacaatagtaagtgagacttaaaacaaagttaaatatatgttgtctttttgtcaaaatat |
29053254 |
T |
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| Q |
110 |
gaagcatttttgcttctaaaatttaatgaaaaataatttcttgttggtaggcctaaagtgaggactttagtggtcttatcctagagtcgatcatgtgtcc |
209 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||| | |
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| T |
29053255 |
gaagcatttttgcttctaaaatctaatgaaaaataatttcttgttggtgggcctaaagtgaggactttagtggtcttatttta---------atgtgttc |
29053345 |
T |
|
| Q |
210 |
aactcactaatgtgattgctcttgaaccaatgtggatgaccctctggaattccctcgtgactcaacaatattgaggcccatttccacaaggatcctctcc |
309 |
Q |
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||||||||| ||||||||||||||||| || |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29053346 |
aactcactagtgtgattgctcttgaactaacgtggatgaccttatggaattccctcatgactcaacaatattgaggcccatttccacaaggatcctctcc |
29053445 |
T |
|
| Q |
310 |
agcagaaccaatctcccagcttcggcttaaaatgcctctcaacagttatcgatccaagcattgagtggcgccgttcgtaacggcccctccatcacactcc |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29053446 |
agcagaaccaatctcccagcttcggcttaaaatgcctctcagcagttatcgatccaagcattgagtggcgccgttcgtaacggcccctc----------- |
29053534 |
T |
|
| Q |
410 |
aactgcacctctttggcacttgtaaatacaccccttcacaacaaatataacaaatacttttttccaccatgaccgtgtttgcatatgccaccctcaacat |
509 |
Q |
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| T |
29053535 |
---tgcacctctttggcacttgtaaatacaccccttcacaacaaatataaaagatacttttttccaccatgaccgtgttcgcatatgccaccctcaacat |
29053631 |
T |
|
| Q |
510 |
ctgactcggcggagcactgctccagtttggtcatccttctaaatggtactgacaatttgttaaagcataaaatcaaatcattattttcactaatgatcat |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29053632 |
ctgactcggcggagcactgctccagtttggtcatccttctaaatggtactgacaatttgttaaagcataaaatcaaatcattattttcactaatgatcat |
29053731 |
T |
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| Q |
610 |
aatttagaccaatttacacattccctcggatttggattaatgatacttctttggacagttttttacgagttattgt |
685 |
Q |
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| T |
29053732 |
aatttagaccaatttacacattccctcggatttggattaatgatacttctttggacagttttttacgagttattgt |
29053807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 34304557 - 34304640
Alignment:
| Q |
119 |
ttgcttctaaaatttaatgaaaaataat-ttcttgttggtaggcctaaagtgaggactttagtggtcttatcctagagtcgatc |
201 |
Q |
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| T |
34304557 |
ttgcttataaaattcaatgaaaaataatatttttgttgttaggcctaaagcgatggctttagtggccttacccttgggtcgatc |
34304640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 14693885 - 14693967
Alignment:
| Q |
116 |
tttttgcttctaaaatttaatgaaaaataatttcttgttggtaggcctaaagtgaggactttagtggtcttatcctagagtcg |
198 |
Q |
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||||||||| ||||||||||||||||||||||| || ||| |||| ||||||||||| ||||||| | |||||||| |||||| |
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| T |
14693885 |
tttttgcttataaaatttaatgaaaaataattttttattgataggtctaaagtgagggctttagttgccttatccttgagtcg |
14693967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 39104070 - 39104168
Alignment:
| Q |
82 |
aatatatgtcgtcttttt-gtcaaaatatgaagcatttttgcttctaaaatttaatgaaaaataatttcttgttggtaggcctaaagtgaggactttagt |
180 |
Q |
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||||||||| |||||||| ||| |||||| ||||||||| || |||||| |||||||||||| ||| |||||||||||||||||| |||| ||||||| |
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| T |
39104070 |
aatatatgtggtcttttttgtctgtatatgaggcatttttgtttataaaatataatgaaaaatatttt-ttgttggtaggcctaaagcgagggctttagt |
39104168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 10484265 - 10484373
Alignment:
| Q |
58 |
taagtgaaacttaaaacaaagttaaatatatgtcgtctttttgtcaaaatatgaagcatttttgcttctaaaatttaatgaaaaataatttcttgttggt |
157 |
Q |
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||||||| || |||| ||| |||||||||||| | |||||| | | ||||||| | ||| ||||| |||||| |||||||||||||||| ||||||| |
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| T |
10484265 |
taagtgagacctaaagcaatgttaaatatatggggccttttttttagaatatgaggtctttctgcttgtaaaatataatgaaaaataattttttgttggg |
10484364 |
T |
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| Q |
158 |
aggcctaaa |
166 |
Q |
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||||||||| |
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| T |
10484365 |
aggcctaaa |
10484373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 2021221 - 2021268
Alignment:
| Q |
134 |
aatgaaaaataatttcttgttggtaggcctaaagtgaggactttagtg |
181 |
Q |
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|||||||||||| || ||||| |||||||||||| ||||||||||||| |
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| T |
2021221 |
aatgaaaaataaatttttgttcgtaggcctaaagcgaggactttagtg |
2021268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 43200466 - 43200411
Alignment:
| Q |
115 |
atttttgcttctaaaatttaatgaaaaataatttcttgttggtaggcctaaagtga |
170 |
Q |
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||||||| || |||||| |||||||||||||||| ||||||| || |||||||||| |
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| T |
43200466 |
atttttgtttataaaatataatgaaaaataattttttgttgggagacctaaagtga |
43200411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 15889121 - 15889055
Alignment:
| Q |
126 |
taaaatttaatgaaaaataat-ttcttgttggtaggcctaaagtgaggactttagtggtcttatcct |
191 |
Q |
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||||||||||||||||||||| || ||| | |||||||||||| |||| ||||||||| |||||||| |
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| T |
15889121 |
taaaatttaatgaaaaataatatttttgcttgtaggcctaaagcgagggctttagtggccttatcct |
15889055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 34250701 - 34250636
Alignment:
| Q |
117 |
ttttgcttctaaaatttaatgaaaaataatttcttgttggtaggcctaaagtgaggactttagtgg |
182 |
Q |
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|||||||| |||||| |||||||||||||| | ||||| | |||||||||||||| ||||||||| |
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| T |
34250701 |
ttttgcttgtaaaatctaatgaaaaataatattttgttattcggcctaaagtgagggctttagtgg |
34250636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0116
Description:
Target: scaffold0116; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 10157 - 10095
Alignment:
| Q |
105 |
aatatgaagcatttttgcttctaaaatttaatgaaaaataatttcttgttggtaggcctaaag |
167 |
Q |
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||||||| || ||||| ||| |||||| |||||||||||||||| ||||||| ||||||||| |
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| T |
10157 |
aatatgaggcttttttacttgtaaaatctaatgaaaaataattttttgttggagggcctaaag |
10095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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