View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14989_high_5 (Length: 258)
Name: NF14989_high_5
Description: NF14989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14989_high_5 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0186 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 18849486 - 18849317
Alignment:
| Q |
74 |
tttcttgtaaatgtaaactaaacaatttggtttttcctattagtgctttgttcaaatatagttatgcaaataagtgcttcttcaaaactactgacactat |
173 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18849486 |
tttcttgaaaatgtaaactaaacaatttggtttttcctattagtgctttggtcaaatatagttatgcaaataagtgcttcttcaaaactactgacactat |
18849387 |
T |
|
| Q |
174 |
ttcttacataaatgaaatatctgtacatgaaatttttccaaactaaacatttatgtgacatagaggatat |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18849386 |
ttcttacataaatgaaatatctgtacatgaaatttttccaaactaaacatttatgtgacatagaggatat |
18849317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 18873482 - 18873432
Alignment:
| Q |
1 |
caaatctgatgctaatgagaaagaagtctacgattttgttgttaactatag |
51 |
Q |
| |
|
||||||| |||| ||||||||||||| || |||||||||||||||||||| |
|
|
| T |
18873482 |
caaatctattgctgatgagaaagaagtgtatgattttgttgttaactatag |
18873432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 74 - 243
Target Start/End: Complemental strand, 183422 - 183253
Alignment:
| Q |
74 |
tttcttgtaaatgtaaactaaacaatttggtttttcctattagtgctttgttcaaatatagttatgcaaataagtgcttcttcaaaactactgacactat |
173 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183422 |
tttcttgaaaatgtaaactaaacaatttggtttttcctattagtgctttggtcaaatatagttatgcaaataagtgcttcttcaaaactactgacactat |
183323 |
T |
|
| Q |
174 |
ttcttacataaatgaaatatctgtacatgaaatttttccaaactaaacatttatgtgacatagaggatat |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
183322 |
ttcttacataaatgaaatatctgtacatgaaatttttccaaactaaacatttatgtaacatagaggatat |
183253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 74 - 243
Target Start/End: Original strand, 14633870 - 14634039
Alignment:
| Q |
74 |
tttcttgtaaatgtaaactaaacaatttggtttttcctattagtgctttgttcaaatatagttatgcaaataagtgcttcttcaaaactactgacactat |
173 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14633870 |
tttcttgaaaatgtaaactaaacaatttggtttttcctattagtgctttggtcaaatatagttatgcaaataagtgcttcttcaaaactactgacactat |
14633969 |
T |
|
| Q |
174 |
ttcttacataaatgaaatatctgtacatgaaatttttccaaactaaacatttatgtgacatagaggatat |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14633970 |
ttcttacataaatgaaatatctgtacatgaaatttttccaaactaaacatttatgtaacatagaggatat |
14634039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 7876 - 7802
Alignment:
| Q |
74 |
tttcttgtaaatgtaaactaaacaatttggtttttcctattagtgctttgttcaaatatagttatgcaaataagt |
148 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||| |
|
|
| T |
7876 |
tttcttgaaaatgtaaactaaacaatttggttgttcctattagtgctttggtccaatatagttatacaaataagt |
7802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University